Mercurial > repos > iuc > package_meme_4_11_0

annotate tool_dependencies.xml @ 1:104cf75e2688 draft

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author iuc
date Mon, 13 Jun 2016 13:10:54 -0400
parents 1c44baf77b0e
children d433098e25b5
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1c44baf77b0e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/package/package_meme_4_11_0 commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
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1 <?xml version="1.0"?>
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2 <tool_dependency>
1c44baf77b0e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/package/package_meme_4_11_0 commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
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3 <package name="libxslt" version="1.1.28">
1c44baf77b0e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/package/package_meme_4_11_0 commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
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4 <repository changeset_revision="b594d25ec277" name="package_libxslt_1_1_28" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
1c44baf77b0e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/package/package_meme_4_11_0 commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
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5 </package>
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6 <package name="perl_xml_parser_expat" version="2.41">
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7 <repository changeset_revision="4b9437687dac" name="package_perl_xml_parser_expat_2_41" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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8 </package>
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1c44baf77b0e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/package/package_meme_4_11_0 commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
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9 <package name="meme" version="4.11.0">
1c44baf77b0e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/package/package_meme_4_11_0 commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
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10 <install version="1.0">
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11 <actions>
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12 <action sha256sum="5dc4841f4816ef25bdb4bd088c76606c1b42726e7d65cc417f0f8c49fe7e237f" type="download_by_url">https://depot.galaxyproject.org/software/meme/meme_4.11.0_src_all.tar.gz</action>
1c44baf77b0e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/package/package_meme_4_11_0 commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
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13 <action type="set_environment_for_install">
1c44baf77b0e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/package/package_meme_4_11_0 commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
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14 <repository changeset_revision="b594d25ec277" name="package_libxslt_1_1_28" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
1c44baf77b0e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/package/package_meme_4_11_0 commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
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15 <package name="libxslt" version="1.1.28" />
1c44baf77b0e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/package/package_meme_4_11_0 commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
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16 </repository>
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17 <repository changeset_revision="4b9437687dac" name="package_perl_xml_parser_expat_2_41" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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18 <package name="perl_xml_parser_expat" version="2.41" />
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19 </repository>
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20 </action>
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21 <action type="shell_command">
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22 # Handle this bug: https://groups.google.com/forum/#!topic/meme-suite/rHmLmSt2IiQ
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23 sed -i.bak -e 's|sprintf(evt_string, "%8g", dataset-&gt;evt)|sprintf(evt_string, "%g", dataset-&gt;evt)|' src/display.c
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1c44baf77b0e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/package/package_meme_4_11_0 commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
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24 </action>
1c44baf77b0e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/package/package_meme_4_11_0 commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
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25 <action type="autoconf" />
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26 <action type="set_environment">
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27 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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28 <environment_variable action="prepend_to" name="PERL5LIB">$ENV[PERL5LIB]</environment_variable>
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1c44baf77b0e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/package/package_meme_4_11_0 commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
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29 </action>
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30 </actions>
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31 </install>
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32 <readme>
1c44baf77b0e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/package/package_meme_4_11_0 commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
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33 </readme>
1c44baf77b0e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/package/package_meme_4_11_0 commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
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34 </package>
1c44baf77b0e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/package/package_meme_4_11_0 commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
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35 </tool_dependency>