Mercurial > repos > iuc > package_macs2_2_1_0

annotate tool_dependencies.xml @ 6:ff467e6b2a11 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_macs2_2_1_0 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
author iuc
date Fri, 09 Oct 2015 05:21:39 -0400
parents aa9a6f914bd5
children 88853ce35531
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="numpy" version="1.7.1">
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ff467e6b2a11 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_macs2_2_1_0 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
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4 <repository changeset_revision="5c489d2d630b" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="scipy" version="0.12.0">
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7 <repository changeset_revision="0d5ee829daaa" name="package_scipy_0_12" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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8 </package>
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9 <!-- 2.1.0.20140616 -->
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10 <package name="macs2" version="2.1.0">
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11 <install version="1.0">
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12 <actions>
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13 <action type="download_by_url">https://pypi.python.org/packages/source/M/MACS2/MACS2-2.1.0.20140616.tar.gz</action>
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15 <action type="set_environment_for_install">
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ff467e6b2a11 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_macs2_2_1_0 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
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16 <repository changeset_revision="5c489d2d630b" name="package_numpy_1_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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17 <package name="numpy" version="1.7.1" />
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18 </repository>
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19 <repository changeset_revision="0d5ee829daaa" name="package_scipy_0_12" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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20 <package name="scipy" version="0.12.0" />
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21 </repository>
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22 </action>
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23 <action type="make_directory">$INSTALL_DIR/lib/python</action>
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24 <!-- exporting the CFLAGS and CPPFLAGS are due to http://stackoverflow.com/questions/22313407/clang-error-unknown-argument-mno-fused-madd-python-package-installation-fa -->
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25 <action type="shell_command">
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26 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
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27 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
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28 </action>
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29 <action type="set_environment">
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30 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
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31 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
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32 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
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33 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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34 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_SCIPY]</environment_variable>
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35 <environment_variable action="set_to" name="PYTHONPATH_MACS2">$INSTALL_DIR/lib/python</environment_variable>
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36 </action>
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37 </actions>
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38 </install>
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39 <readme>Macs2 installation instructions. MACS2 can be found at https://github.com/taoliu/MACS</readme>
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40 </package>
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41 </tool_dependency>