Mercurial > repos > iuc > package_legacy_blast_2_2_22

annotate tool_dependencies.xml @ 0:b2a669334165 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
author iuc
date Fri, 24 Jun 2016 16:25:26 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
1 <?xml version='1.0' encoding='utf-8'?>
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
2 <tool_dependency>
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
3 <package name="legacy_blast" version="2.2.22">
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
4 <install version="1.0">
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
5 <actions_group>
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
6 <!-- Download the binaries for BLAST compatible with 64-bit OSX. -->
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
7 <actions os="darwin" architecture="x86_64">
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
8 <action type="download_by_url" target_filename="blast-2.2.22.tgz">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/legacy/2.2.22/blast-2.2.22-universal-macosx.tar.gz</action>
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
9 <action type="move_directory_files">
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
10 <source_directory>bin</source_directory>
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
11 <destination_directory>$INSTALL_DIR</destination_directory>
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
12 </action>
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
13 </actions>
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
14 <!-- Download the binaries for BLAST compatible with 32-bit OSX. -->
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
15 <actions os="darwin" architecture="i386">
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
16 <action type="download_by_url" target_filename="blast-2.2.22.tgz">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/legacy/2.2.22/blast-2.2.22-universal-macosx.tar.gz</action>
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
17 <action type="move_directory_files">
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
18 <source_directory>bin</source_directory>
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
19 <destination_directory>$INSTALL_DIR</destination_directory>
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
20 </action>
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
21 </actions>
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
22 <!-- Download the binaries for BLAST compatible with 64-bit Linux. -->
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
23 <actions os="linux" architecture="x86_64">
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
24 <action type="download_by_url" target_filename="blast-2.2.22.tgz">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/legacy/2.2.22/blast-2.2.22-x64-linux.tar.gz</action>
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
25 <action type="move_directory_files">
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
26 <source_directory>bin</source_directory>
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
27 <destination_directory>$INSTALL_DIR</destination_directory>
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
28 </action>
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
29 </actions>
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
30 <!-- Download the binaries for BLAST compatible with 32-bit Linux (i386). -->
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
31 <actions os="linux" architecture="i386">
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
32 <action type="download_by_url" target_filename="blast-2.2.22.tgz">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/legacy/2.2.22/blast-2.2.22-ia32-linux.tar.gz</action>
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
33 <action type="move_directory_files">
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
34 <source_directory>bin</source_directory>
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
35 <destination_directory>$INSTALL_DIR</destination_directory>
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
36 </action>
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
37 </actions>
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
38 <!-- Download the binaries for BLAST compatible with 32-bit Linux (i686). -->
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
39 <actions os="linux" architecture="i686">
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
40 <action type="download_by_url" target_filename="blast-2.2.22.tgz">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/legacy/2.2.22/blast-2.2.22-ia32-linux.tar.gz</action>
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
41 <action type="move_directory_files">
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
42 <source_directory>bin</source_directory>
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
43 <destination_directory>$INSTALL_DIR</destination_directory>
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
44 </action>
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
45 </actions>
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
46 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. -->
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
47 <action type="set_environment">
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
48 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
49 </action>
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
50 </actions_group>
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
51 </install>
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
52 <readme>
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
53 *Repository Description*
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
54 The package_blast_legacy_2_2_22 repository downloads and builds the legacy NCBI Blast source code v2.2.22 on various operating systems and architectures.
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
55 The repository is a modification of the NCBI Blast Plus package.
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
56
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
57 These links provide information for building the legacy NCBI Blast package in most environments.
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
58
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
59 System requirements
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
60 http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&amp;PAGE_TYPE=BlastDocs&amp;DOC_TYPE=Download
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
61 </readme>
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
62 </package>
b2a669334165 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit 180a403421967d36f995941b1a4561349d75cfc5
iuc
parents:
diff changeset
63 </tool_dependency>