annotate tool_dependencies.xml @ 12:259c79e51dbc draft default tip

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author iuc
date Wed, 18 Mar 2015 22:37:28 -0400
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="pysam" version="0.7.7">
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4 <repository changeset_revision="ca10c522f37e" name="package_pysam_0_7_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="labels" version="1.0.5">
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7 <install version="1.0">
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8 <actions>
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9 <action type="download_by_url">https://pypi.python.org/packages/source/l/lapels/lapels-1.0.5.tar.gz</action>
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10 <action type="set_environment_for_install">
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11 <repository changeset_revision="ca10c522f37e" name="package_pysam_0_7_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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12 <package name="pysam" version="0.7.7" />
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13 </repository>
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14 </action>
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15 <action type="make_directory">$INSTALL_DIR/lib/python</action>
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16 <action type="shell_command">
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17 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
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18 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
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19 </action>
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20 <action type="set_environment">
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21 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
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22 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYSAM_PATH]/lib/python</environment_variable>
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23 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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24 <environment_variable action="prepend_to" name="PATH">$ENV[PYSAM_PATH]</environment_variable>
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25 <environment_variable action="set_to" name="PYTHONPATH_LABELS">$INSTALL_DIR/lib/python</environment_variable>
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26 </action>
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27 </actions>
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28 </install>
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29 <readme>The PYTHONPATH for labels can be accessed through PYTHONPATH_LABELS.</readme>
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30 </package>
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31 </tool_dependency>