annotate tool_dependencies.xml @ 2:dfdc7a95a3cd draft

Uploaded
author iuc
date Sat, 02 Aug 2014 08:06:09 -0400
parents a8c9679ec601
children 056a5e8e3a52
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
65bdccf690ec Uploaded
iuc
parents:
diff changeset
1 <?xml version="1.0"?>
65bdccf690ec Uploaded
iuc
parents:
diff changeset
2 <tool_dependency>
65bdccf690ec Uploaded
iuc
parents:
diff changeset
3 <package name="numpy" version="1.7.1">
65bdccf690ec Uploaded
iuc
parents:
diff changeset
4 <repository changeset_revision="240d1ad9f207" name="package_pysam_0_7_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
65bdccf690ec Uploaded
iuc
parents:
diff changeset
5 </package>
65bdccf690ec Uploaded
iuc
parents:
diff changeset
6 <package name="labels" version="1.0.5">
65bdccf690ec Uploaded
iuc
parents:
diff changeset
7 <install version="1.0">
65bdccf690ec Uploaded
iuc
parents:
diff changeset
8 <actions>
65bdccf690ec Uploaded
iuc
parents:
diff changeset
9 <action type="download_by_url">https://pypi.python.org/packages/source/l/lapels/lapels-1.0.5.tar.gz</action>
65bdccf690ec Uploaded
iuc
parents:
diff changeset
10 <action type="set_environment_for_install">
65bdccf690ec Uploaded
iuc
parents:
diff changeset
11 <repository changeset_revision="240d1ad9f207" name="package_pysam_0_7_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
65bdccf690ec Uploaded
iuc
parents:
diff changeset
12 <package name="pysam" version="0.7.7" />
65bdccf690ec Uploaded
iuc
parents:
diff changeset
13 </repository>
65bdccf690ec Uploaded
iuc
parents:
diff changeset
14 </action>
65bdccf690ec Uploaded
iuc
parents:
diff changeset
15 <action type="make_directory">$INSTALL_DIR/lib/python</action>
65bdccf690ec Uploaded
iuc
parents:
diff changeset
16 <action type="shell_command">
65bdccf690ec Uploaded
iuc
parents:
diff changeset
17 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
65bdccf690ec Uploaded
iuc
parents:
diff changeset
18 export PATH=$PATH:$PYSAM_PATH &amp;&amp;
65bdccf690ec Uploaded
iuc
parents:
diff changeset
19 export PYTHONPATH=$PYTHONPATH:$PYSAM_PATH/lib/python &amp;&amp;
1
a8c9679ec601 Uploaded
iuc
parents: 0
diff changeset
20 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
0
65bdccf690ec Uploaded
iuc
parents:
diff changeset
21 </action>
65bdccf690ec Uploaded
iuc
parents:
diff changeset
22 <action type="set_environment">
65bdccf690ec Uploaded
iuc
parents:
diff changeset
23 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
65bdccf690ec Uploaded
iuc
parents:
diff changeset
24 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYSAM_PATH]/lib/python</environment_variable>
2
dfdc7a95a3cd Uploaded
iuc
parents: 1
diff changeset
25 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
0
65bdccf690ec Uploaded
iuc
parents:
diff changeset
26 <environment_variable action="prepend_to" name="PATH">$ENV[PYSAM_PATH]</environment_variable>
65bdccf690ec Uploaded
iuc
parents:
diff changeset
27 <environment_variable action="set_to" name="PYTHONPATH_LABELS">$INSTALL_DIR/lib/python</environment_variable>
65bdccf690ec Uploaded
iuc
parents:
diff changeset
28 </action>
65bdccf690ec Uploaded
iuc
parents:
diff changeset
29 </actions>
65bdccf690ec Uploaded
iuc
parents:
diff changeset
30 </install>
65bdccf690ec Uploaded
iuc
parents:
diff changeset
31 <readme>The PYTHONPATH for labels can be accessed through PYTHONPATH_LABELS.</readme>
65bdccf690ec Uploaded
iuc
parents:
diff changeset
32 </package>
65bdccf690ec Uploaded
iuc
parents:
diff changeset
33 </tool_dependency>