Mercurial > repos > iuc > package_khmer_2_0

comparison tool_dependencies.xml @ 4:30fef72bb5ea draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit be26d5871e25cedbc642669993e64439715c7a24
author iuc
date Thu, 12 Nov 2015 02:52:56 -0500
parents 6e27d4c40bf6
children 80f3e4a906b1
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3:6e27d4c40bf6 4:30fef72bb5ea
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="python" version="2.7.10"> 3 <package name="bz2file" version="0.98">
4 <repository changeset_revision="2f32acbaf21a" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="f504007348bb" name="package_bz2file_0_98" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="screed" version="0.9">
7 <repository changeset_revision="09145f96007c" name="package_screed_0_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package> 8 </package>
6 <package name="khmer" version="2.0"> 9 <package name="khmer" version="2.0">
7 <install version="1.0"> 10 <install version="1.0">
8 <actions> 11 <actions>
9 <action type="setup_python_environment"> 12 <action md5sum="1f610abd021254e21b082179a100cd39" type="download_by_url">https://pypi.python.org/packages/source/k/khmer/khmer-2.0.tar.gz</action>
10 <repository changeset_revision="2f32acbaf21a" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 13 <action type="shell_command">
11 <package name="python" version="2.7.10" /> 14 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
12 </repository> 15 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
13 <package md5sum="27d6f711ae0db6cfd1eb37f95621dfb5">https://pypi.python.org/packages/source/b/bz2file/bz2file-0.98.tar.gz</package> 16 </action>
14 <package md5sum="611dd11105489e4153265e055f13debd">https://pypi.python.org/packages/source/s/screed/screed-0.9.tar.gz</package> 17 <action type="set_environment">
15 <package md5sum="1f610abd021254e21b082179a100cd39">https://pypi.python.org/packages/source/k/khmer/khmer-2.0.tar.gz</package> 18 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
19 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
16 </action> 20 </action>
17 </actions> 21 </actions>
18 </install> 22 </install>
19 </package> 23 </package>
20 </tool_dependency> 24 </tool_dependency>