Mercurial > repos > iuc > package_imagej_1_48

annotate tool_dependencies.xml @ 0:9fc25eeb40e4 draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
author iuc
date Tue, 09 Jun 2015 12:20:19 -0400
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9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
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1 <?xml version="1.0"?>
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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2 <tool_dependency>
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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3 <package name="imagej" version="1.48">
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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4 <install version="1.0">
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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5 <actions_group>
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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6 <actions os="linux" architecture="x86_64">
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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7 <action type="download_by_url">http://rsb.info.nih.gov/ij/download/linux/ij148-linux64.zip</action>
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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8 <action type="move_directory_files">
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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9 <source_directory>.</source_directory>
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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10 <destination_directory>$INSTALL_DIR/bin</destination_directory>
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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11 </action>
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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12 </actions>
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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13 <actions os="darwin" architecture="x86_64">
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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14 <action type="download_by_url">http://rsb.info.nih.gov/ij/download/osx/ImageJ148.zip</action>
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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15 <action type="move_directory_files">
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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16 <source_directory>.</source_directory>
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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17 <destination_directory>$INSTALL_DIR/bin</destination_directory>
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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18 </action>
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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19 </actions>
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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20 <actions>
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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21 <action type="download_by_url">http://rsb.info.nih.gov/ij/download/zips/ij148.zip</action>
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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22 <action type="move_directory_files">
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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23 <source_directory>.</source_directory>
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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24 <destination_directory>$INSTALL_DIR/bin</destination_directory>
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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25 </action>
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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26 </actions>
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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27 <action type="set_environment">
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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28 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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29 <environment_variable name="IMAGEJ_ROOT_DIR" action="set_to">$INSTALL_DIR</environment_variable>
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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30 <environment_variable name="IMAGEJ_PLUGINS_DIR" action="set_to">$INSTALL_DIR/bin/plugins</environment_variable>
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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31 </action>
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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32 </actions_group>
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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33 </install>
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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34 <readme>
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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35 <![CDATA[
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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36 ImageJ is a public domain Java image processing program inspired by NIH Image for the Macintosh.
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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37 It runs, either as an online applet or as a downloadable application, on any computer with a
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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38 Java 1.4 or later virtual machine.
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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39
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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40 It can display, edit, analyze, process, save and print 8-bit, 16-bit and 32-bit images. It can read
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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41 many image formats including TIFF, GIF, JPEG, BMP, DICOM, FITS and "raw". It supports "stacks", a
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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42 series of images that share a single window. It is multithreaded, so time-consuming operations such
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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43 as image file reading can be performed in parallel with other operations.
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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44
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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45 See http://rsb.info.nih.gov/ij/docs/intro.html
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46 ]]>
9fc25eeb40e4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/packages/package_imagej_1_48 commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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47 </readme>
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48 </package>
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49 </tool_dependency>