Mercurial > repos > iuc > package_gmap_2016_09_23

diff tool_dependencies.xml @ 0:78dcc4213e07 draft

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Uploaded initial version, based on JJ's package_gmap_2013_05_09
author iuc
date Tue, 25 Oct 2016 05:22:46 -0400
parents
children cddc18d238f7
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Oct 25 05:22:46 2016 -0400
@@ -0,0 +1,18 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="gmap" version="2016-09-23">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url" target_filename="gmap-2016-09-23.tar.gz" sha256sum="dbb99cab7ee675bdc79d6773d7537b197812e73151c5dafa1fbc8f9c0c58ef93">http://research-pub.gene.com/gmap/src/gmap-gsnap-2016-09-23.tar.gz</action>
+                <action type="shell_command"> ./configure --prefix=$INSTALL_DIR --with-gmapdb=$INSTALL_DIR/gmapdb</action>
+                <action type="shell_command">make</action>
+                <action type="shell_command">make install</action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+        </readme>
+    </package>
+</tool_dependency>