annotate tool_dependencies.xml @ 2:8e8be119bda7 draft default tip

Fix URL
author iuc
date Tue, 25 Oct 2016 09:10:19 -0400
parents cddc18d238f7
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
78dcc4213e07 Uploaded initial version, based on JJ's package_gmap_2013_05_09
iuc
parents:
diff changeset
1 <?xml version="1.0"?>
78dcc4213e07 Uploaded initial version, based on JJ&#39;s package_gmap_2013_05_09
iuc
parents:
diff changeset
2 <tool_dependency>
1
cddc18d238f7 Use dots in package version to match BioConda
iuc
parents: 0
diff changeset
3 <package name="gmap" version="2016.09.23">
0
78dcc4213e07 Uploaded initial version, based on JJ&#39;s package_gmap_2013_05_09
iuc
parents:
diff changeset
4 <install version="1.0">
78dcc4213e07 Uploaded initial version, based on JJ&#39;s package_gmap_2013_05_09
iuc
parents:
diff changeset
5 <actions>
2
8e8be119bda7 Fix URL
iuc
parents: 1
diff changeset
6 <action type="download_by_url" target_filename="gmap-2016-09-23.tar.gz" sha256sum="dbb99cab7ee675bdc79d6773d7537b197812e73151c5dafa1fbc8f9c0c58ef93">http://research-pub.gene.com/gmap/src/gmap-gsnap-2016-09-23.tar.gz</action>
0
78dcc4213e07 Uploaded initial version, based on JJ&#39;s package_gmap_2013_05_09
iuc
parents:
diff changeset
7 <action type="shell_command"> ./configure --prefix=$INSTALL_DIR --with-gmapdb=$INSTALL_DIR/gmapdb</action>
78dcc4213e07 Uploaded initial version, based on JJ&#39;s package_gmap_2013_05_09
iuc
parents:
diff changeset
8 <action type="shell_command">make</action>
78dcc4213e07 Uploaded initial version, based on JJ&#39;s package_gmap_2013_05_09
iuc
parents:
diff changeset
9 <action type="shell_command">make install</action>
78dcc4213e07 Uploaded initial version, based on JJ&#39;s package_gmap_2013_05_09
iuc
parents:
diff changeset
10 <action type="set_environment">
78dcc4213e07 Uploaded initial version, based on JJ&#39;s package_gmap_2013_05_09
iuc
parents:
diff changeset
11 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
78dcc4213e07 Uploaded initial version, based on JJ&#39;s package_gmap_2013_05_09
iuc
parents:
diff changeset
12 </action>
78dcc4213e07 Uploaded initial version, based on JJ&#39;s package_gmap_2013_05_09
iuc
parents:
diff changeset
13 </actions>
78dcc4213e07 Uploaded initial version, based on JJ&#39;s package_gmap_2013_05_09
iuc
parents:
diff changeset
14 </install>
78dcc4213e07 Uploaded initial version, based on JJ&#39;s package_gmap_2013_05_09
iuc
parents:
diff changeset
15 <readme>
78dcc4213e07 Uploaded initial version, based on JJ&#39;s package_gmap_2013_05_09
iuc
parents:
diff changeset
16 </readme>
78dcc4213e07 Uploaded initial version, based on JJ&#39;s package_gmap_2013_05_09
iuc
parents:
diff changeset
17 </package>
78dcc4213e07 Uploaded initial version, based on JJ&#39;s package_gmap_2013_05_09
iuc
parents:
diff changeset
18 </tool_dependency>