Mercurial > repos > iuc > package_gfserver_35x1

annotate tool_dependencies.xml @ 0:10c4d2d3d1bd draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
author iuc
date Tue, 19 May 2015 22:40:17 -0400
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children 98eff4a5927e
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10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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1 <tool_dependency>
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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2 <package name="gfServer" version="35x1">
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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3 <install version="1.0">
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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4 <actions>
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iuc
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5 <action type="download_binary">
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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6 <url_template os="linux" architecture="x86_64">https://github.com/bgruening/download_store/raw/master/ucsc/linux/x86_64/gfServer_35x1</url_template>
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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7 <url_template os="darwin" architecture="i686">https://github.com/bgruening/download_store/raw/master/ucsc/darwin/i386/gfServer_35x1</url_template>
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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8 <url_template os="darwin" architecture="i386">https://github.com/bgruening/download_store/raw/master/ucsc/darwin/i386/gfServer_35x1</url_template>
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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9 <url_template os="darwin" architecture="x86_64">https://github.com/bgruening/download_store/raw/master/ucsc/darwin/x86_64/gfServer_35x1</url_template>
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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10 </action>
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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11
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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12 <action type="move_file">
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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13 <source>gfServer_35x1</source>
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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14 <destination>$INSTALL_DIR/bin/gfServer</destination>
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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15 </action>
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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16 <action type="chmod">
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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17 <file mode="755">$INSTALL_DIR/bin/gfServer</file>
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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18 </action>
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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19 <action type="set_environment">
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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20 <environment_variable name="PATH" action="append_to">$INSTALL_DIR/bin</environment_variable>
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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21 <environment_variable name="GFSERVER_ROOT_PATH" action="append_to">$INSTALL_DIR</environment_variable>
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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22 </action>
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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23
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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24 </actions>
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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25 </install>
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iuc
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26 <readme>
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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27 gfServer: a server that maintains an index of the genome in memory and uses the index to quickly find regions with high levels of sequence similarity to a query sequence.
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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28 http://genome.ucsc.edu/goldenPath/help/blatSpec.html
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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29 </readme>
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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30 </package>
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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31 </tool_dependency>