Mercurial > repos > iuc > package_fastx_toolkit_0_0_14
diff tool_dependencies.xml @ 8:f5725bc779f6 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastx_toolkit_0_0_14 commit 231157132a50f5bc8f9d0c8151c4ddca86c97213-dirty
| author | iuc |
|---|---|
| date | Thu, 15 Sep 2016 07:36:35 -0400 |
| parents | a427d7677d40 |
| children | ebe91775fed7 |
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--- a/tool_dependencies.xml Thu Sep 15 07:25:56 2016 -0400 +++ b/tool_dependencies.xml Thu Sep 15 07:36:35 2016 -0400 @@ -5,18 +5,35 @@ </package> <package name="fastx_toolkit" version="0.0.14"> <install version="1.0"> - <actions> - <action sha256sum="9e1f00c4c9f286be59ac0e07ddb7504f3b6433c93c5c7941d6e3208306ff5806" type="download_by_url">https://github.com/agordon/fastx_toolkit/releases/download/0.0.14/fastx_toolkit-0.0.14.tar.bz2</action> - <action type="set_environment_for_install"> - <repository changeset_revision="d494074f5161" name="package_libgtextutils_0_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu"> - <package name="libgtextutils" version="0.7" /> - </repository> - </action> - <action type="autoconf">--disable-wall</action> - <action type="set_environment"> - <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> - </action> - </actions> + <actions_group> + <actions architecture="x86_64" os="darwin"> + <action sha256sum="9e1f00c4c9f286be59ac0e07ddb7504f3b6433c93c5c7941d6e3208306ff5806" type="download_by_url">https://github.com/agordon/fastx_toolkit/releases/download/0.0.14/fastx_toolkit-0.0.14.tar.bz2</action> + <action type="set_environment_for_install"> + <repository changeset_revision="d494074f5161" name="package_libgtextutils_0_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu"> + <package name="libgtextutils" version="0.7" /> + </repository> + </action> + <action type="shell_command"> + export MACOSX_DEPLOYMENT_TARGET=10.7 && + CXXFLAGS="${CXXFLAGS} -std=c++11 -stdlib=libc++" && + ./configure --prefix=$INSTALL_DIR --disable-wall && make && make install </action> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + </action> + </actions> + <actions> + <action sha256sum="9e1f00c4c9f286be59ac0e07ddb7504f3b6433c93c5c7941d6e3208306ff5806" type="download_by_url">https://github.com/agordon/fastx_toolkit/releases/download/0.0.14/fastx_toolkit-0.0.14.tar.bz2</action> + <action type="set_environment_for_install"> + <repository changeset_revision="d494074f5161" name="package_libgtextutils_0_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu"> + <package name="libgtextutils" version="0.7" /> + </repository> + </action> + <action type="autoconf">--disable-wall</action> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + </action> + </actions> + </actions_group> </install> <readme> The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing.