Mercurial > repos > iuc > package_fastx_toolkit_0_0_14

diff tool_dependencies.xml @ 0:5197ffc5cb2e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastx_toolkit_0_0_14 commit 231157132a50f5bc8f9d0c8151c4ddca86c97213-dirty
author iuc
date Thu, 15 Sep 2016 06:32:16 -0400
parents
children 6f34efe4d0fc
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Sep 15 06:32:16 2016 -0400
@@ -0,0 +1,26 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="libgtextutils" version="0.6">
+        <repository changeset_revision="3f8eeecabf16" name="package_libgtextutils_0_6" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="fastx_toolkit" version="0.0.14">
+        <install version="1.0">
+            <actions>
+                <action sha256sum="9e1f00c4c9f286be59ac0e07ddb7504f3b6433c93c5c7941d6e3208306ff5806" type="download_by_url">https://github.com/agordon/fastx_toolkit/releases/download/0.0.14/fastx_toolkit-0.0.14.tar.bz2</action>
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="3f8eeecabf16" name="package_libgtextutils_0_6" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="libgtextutils" version="0.6" />
+                    </repository>
+                </action>
+                <action type="shell_command">./configure --prefix=$INSTALL_DIR --disable-wall</action>
+                <action type="shell_command">make &amp;&amp; make install</action>
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing.
+        </readme>
+    </package>
+</tool_dependency>