Mercurial > repos > iuc > package_fastqc_0_11_4

annotate tool_dependencies.xml @ 0:0eddbbf82050 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
author iuc
date Fri, 15 Jan 2016 10:20:27 -0500
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children 1f20c0e3ebda
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0eddbbf82050 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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1 <?xml version="1.0"?>
0eddbbf82050 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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2 <tool_dependency>
0eddbbf82050 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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3 <package name="FastQC" version="0.11.4">
0eddbbf82050 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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4 <install version="1.0">
0eddbbf82050 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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5 <actions_group>
0eddbbf82050 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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6 <actions os="linux" architecture="x86_64">
0eddbbf82050 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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7 <action type="download_by_url" sha256sum="adb233f9fae7b02fe99e716664502adfec1b9a3fbb84eed4497122d6d33d1fe7">https://depot.galaxyproject.org/software/fastqc/fastqc_0.11.4_linux_all.zip</action>
0eddbbf82050 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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8 <action type="move_directory_files">
0eddbbf82050 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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9 <source_directory>../FastQC</source_directory>
0eddbbf82050 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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10 <destination_directory>$INSTALL_DIR</destination_directory>
0eddbbf82050 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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11 <action type="shell_command">chmod ugo+x $INSTALL_DIR/fastqc</action>
0eddbbf82050 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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12 </action>
0eddbbf82050 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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13 </actions>
0eddbbf82050 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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14 <actions os="darwin" architecture="x86_64">
0eddbbf82050 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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15 <action type="download_by_url" sha256sum="bd4089397cfa1086d81e7b29508542d2478917df8d1ef1fb494616da1b8e651a">https://depot.galaxyproject.org/software/fastqc/fastqc_0.11.4_darwin_all.dmg</action>
0eddbbf82050 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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16 <action type="shell_command">
0eddbbf82050 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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17 hdiutil attach fastqc_v0.11.4.dmg &amp;&amp;
0eddbbf82050 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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18 cp -R /Volumes/FastQC/FastQC.app $INSTALL_DIR &amp;&amp;
0eddbbf82050 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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19 hdiutil detach /Volumes/FastQC
0eddbbf82050 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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20 </action>
0eddbbf82050 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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21 <action type="shell_command">chmod ugo+x $INSTALL_DIR/fastqc</action>
0eddbbf82050 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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22 </actions>
0eddbbf82050 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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23 <action type="set_environment">
0eddbbf82050 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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24 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
0eddbbf82050 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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25 </action>
0eddbbf82050 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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26 </actions_group>
0eddbbf82050 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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27 </install>
0eddbbf82050 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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28 </package>
0eddbbf82050 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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29 </tool_dependency>