Mercurial > repos > iuc > package_dexseq_1_14

annotate tool_dependencies.xml @ 8:34c420097324 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_dexseq_1_14 commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
author iuc
date Tue, 22 Dec 2015 19:13:04 -0500
parents 6346a4883a01
children
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cb7ad0ece9e8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_dexseq_1_14 commit 93762b03363b176c3bc9bff78e34db8b2c1971b1-dirty
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1 <?xml version="1.0"?>
cb7ad0ece9e8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_dexseq_1_14 commit 93762b03363b176c3bc9bff78e34db8b2c1971b1-dirty
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2 <tool_dependency>
cb7ad0ece9e8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_dexseq_1_14 commit 93762b03363b176c3bc9bff78e34db8b2c1971b1-dirty
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3 <package name="R" version="3.2.1">
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4 <repository changeset_revision="c6ebd3a51334" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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cb7ad0ece9e8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_dexseq_1_14 commit 93762b03363b176c3bc9bff78e34db8b2c1971b1-dirty
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5 </package>
4
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6 <package name="cairo" version="1.14.2">
8
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7 <repository changeset_revision="66ad0cc12007" name="package_cairo_1_14_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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cb7ad0ece9e8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_dexseq_1_14 commit 93762b03363b176c3bc9bff78e34db8b2c1971b1-dirty
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8 </package>
cb7ad0ece9e8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_dexseq_1_14 commit 93762b03363b176c3bc9bff78e34db8b2c1971b1-dirty
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9 <package name="tiff" version="4.0.3">
cb7ad0ece9e8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_dexseq_1_14 commit 93762b03363b176c3bc9bff78e34db8b2c1971b1-dirty
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10 <repository changeset_revision="3fecd5a9a64c" name="package_tiff_4_0_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
cb7ad0ece9e8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_dexseq_1_14 commit 93762b03363b176c3bc9bff78e34db8b2c1971b1-dirty
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11 </package>
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12 <package name="freetype" version="2.5.2">
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13 <repository changeset_revision="a2cc77cfe7fc" name="package_freetype_2_5_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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14 </package>
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15 <package name="pixman" version="0.32.6">
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16 <repository changeset_revision="82d1a680686f" name="package_pixman_0_32_6" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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17 </package>
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18 <package name="libpng" version="1.6.7">
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19 <repository changeset_revision="3571cd50dda2" name="package_libpng_1_6_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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20 </package>
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21 <package name="libxml2" version="2.9.1">
8
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22 <repository changeset_revision="492a5c665b59" name="package_libxml2_2_9_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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23 </package>
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24 <package name="libcurl" version="7.35">
6
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25 <repository changeset_revision="8d4b20e45bd1" name="package_libcurl_7_35" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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754e88370c3b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_dexseq_1_14 commit c15de572c77add5e51ae0be9be951a6730192e7d-dirty
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26 </package>
0
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27 <package name="dexseq" version="1.14">
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28 <install version="1.0">
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29 <actions>
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30 <action type="setup_r_environment">
8
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31 <repository changeset_revision="c6ebd3a51334" name="package_r_3_2_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
0
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32 <package name="R" version="3.2.1" />
cb7ad0ece9e8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_dexseq_1_14 commit 93762b03363b176c3bc9bff78e34db8b2c1971b1-dirty
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33 </repository>
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34 <repository changeset_revision="3fecd5a9a64c" name="package_tiff_4_0_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
cb7ad0ece9e8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_dexseq_1_14 commit 93762b03363b176c3bc9bff78e34db8b2c1971b1-dirty
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35 <package name="tiff" version="4.0.3" />
cb7ad0ece9e8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_dexseq_1_14 commit 93762b03363b176c3bc9bff78e34db8b2c1971b1-dirty
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36 </repository>
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37 <repository changeset_revision="66ad0cc12007" name="package_cairo_1_14_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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38 <package name="cairo" version="1.14.2" />
0
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39 </repository>
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40 <repository changeset_revision="a2cc77cfe7fc" name="package_freetype_2_5_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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41 <package name="freetype" version="2.5.2" />
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42 </repository>
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43 <repository changeset_revision="82d1a680686f" name="package_pixman_0_32_6" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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d8a45cbc4208 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_dexseq_1_14 commit c15de572c77add5e51ae0be9be951a6730192e7d-dirty
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44 <package name="pixman" version="0.32.6" />
3
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45 </repository>
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46 <repository changeset_revision="3571cd50dda2" name="package_libpng_1_6_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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47 <package name="libpng" version="1.6.7" />
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48 </repository>
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49 <repository changeset_revision="8d4b20e45bd1" name="package_libcurl_7_35" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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50 <package name="libcurl" version="7.35" />
754e88370c3b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_dexseq_1_14 commit c15de572c77add5e51ae0be9be951a6730192e7d-dirty
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51 </repository>
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52 <!-- libxml2 needs to be sourced after R because R also was compiled against a different version of libxml2 -->
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53 <repository changeset_revision="492a5c665b59" name="package_libxml2_2_9_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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4eb8bb74d3d5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_dexseq_1_14 commit 0b7ec1dbf0ee8bd3888d2782909b359e1b8fdeaa-dirty
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54 <package name="libxml2" version="2.9.1" />
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55 </repository>
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56 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/Cairo_1.5-8.tar.gz</package>
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57 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/rjson_0.2.15.tar.gz</package>
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58 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/getopt_1.20.0.tar.gz</package>
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59 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/lambda.r_1.1.7.tar.gz</package>
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60 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/futile.options_1.0.0.tar.gz</package>
cb7ad0ece9e8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_dexseq_1_14 commit 93762b03363b176c3bc9bff78e34db8b2c1971b1-dirty
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61 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/futile.logger_1.4.1.tar.gz</package>
cb7ad0ece9e8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_dexseq_1_14 commit 93762b03363b176c3bc9bff78e34db8b2c1971b1-dirty
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62 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/snow_0.3-13.tar.gz</package>
cb7ad0ece9e8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_dexseq_1_14 commit 93762b03363b176c3bc9bff78e34db8b2c1971b1-dirty
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63 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/BiocParallel_1.2.20.tar.gz</package>
cb7ad0ece9e8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_dexseq_1_14 commit 93762b03363b176c3bc9bff78e34db8b2c1971b1-dirty
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64 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/BiocGenerics_0.14.0.tar.gz</package>
cb7ad0ece9e8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_dexseq_1_14 commit 93762b03363b176c3bc9bff78e34db8b2c1971b1-dirty
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65 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/Biobase_2.28.0.tar.gz</package>
cb7ad0ece9e8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_dexseq_1_14 commit 93762b03363b176c3bc9bff78e34db8b2c1971b1-dirty
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66 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/S4Vectors_0.6.4.tar.gz</package>
cb7ad0ece9e8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_dexseq_1_14 commit 93762b03363b176c3bc9bff78e34db8b2c1971b1-dirty
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67 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/IRanges_2.2.7.tar.gz</package>
cb7ad0ece9e8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_dexseq_1_14 commit 93762b03363b176c3bc9bff78e34db8b2c1971b1-dirty
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79 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/survival_2.38-3.tar.gz</package>
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81 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/lattice_0.20-33.tar.gz</package>
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82 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/locfit_1.5-9.1.tar.gz</package>
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84 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/geneplotter_1.46.0.tar.gz</package>
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85 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/plyr_1.8.3.tar.gz</package>
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86 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/digest_0.6.8.tar.gz</package>
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87 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/gtable_0.1.2.tar.gz</package>
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88 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/stringi_0.5-5.tar.gz</package>
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89 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/magrittr_1.5.tar.gz</package>
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90 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/stringr_1.0.0.tar.gz</package>
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91 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/reshape2_1.4.1.tar.gz</package>
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92 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/dichromat_2.0-0.tar.gz</package>
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93 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/colorspace_1.2-6.tar.gz</package>
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94 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/munsell_0.4.2.tar.gz</package>
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95 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/labeling_0.3.tar.gz</package>
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96 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/scales_0.3.0.tar.gz</package>
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97 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/proto_0.3-10.tar.gz</package>
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98 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/MASS_7.3-44.tar.gz</package>
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99 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/ggplot2_1.0.1.tar.gz</package>
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100 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/Formula_1.2-1.tar.gz</package>
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101 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/latticeExtra_0.6-26.tar.gz</package>
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102 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/cluster_2.0.3.tar.gz</package>
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103 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/rpart_4.1-10.tar.gz</package>
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104 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/nnet_7.3-11.tar.gz</package>
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105 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/acepack_1.3-3.3.tar.gz</package>
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106 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/foreign_0.8-66.tar.gz</package>
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107 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/gridExtra_2.0.0.tar.gz</package>
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108 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/Hmisc_3.16-0.tar.gz</package>
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109 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/DESeq2_1.8.1.tar.gz</package>
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110 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/bitops_1.0-6.tar.gz</package>
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111 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/RCurl_1.95-4.7.tar.gz</package>
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112 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/biomaRt_2.24.0.tar.gz</package>
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113 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/hwriter_1.3.2.tar.gz</package>
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114 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/zlibbioc_1.14.0.tar.gz</package>
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115 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/Biostrings_2.36.4.tar.gz</package>
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116 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/Rsamtools_1.20.4.tar.gz</package>
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117 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/statmod_1.4.21.tar.gz</package>
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118 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/DEXSeq_1.14.2.tar.gz</package>
cb7ad0ece9e8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_dexseq_1_14 commit 93762b03363b176c3bc9bff78e34db8b2c1971b1-dirty
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119 </action>
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120 <action type="set_environment">
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121 <environment_variable action="set_to" name="DEXSEQ_ROOT">$INSTALL_DIR/DEXSeq/</environment_variable>
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122 </action>
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123 </actions>
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124 </install>
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125 <readme>
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126 DEXSeq in version
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127 </readme>
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128 </package>
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129 </tool_dependency>