Mercurial > repos > iuc > package_bwa_0_7_12

changeset 0:67aa12c8d449 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bwa_0_7_12 commit 084c7cfe901be76c2ba556a0a1920a2d6e7e66dd
author iuc
date Mon, 30 Nov 2015 09:25:35 -0500
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 18 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Nov 30 09:25:35 2015 -0500
@@ -0,0 +1,18 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="bwa" version="0.7.12">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url" md5sum="075704634146ec8cc7543c0dee8960e7">http://downloads.sourceforge.net/project/bio-bwa/bwa-0.7.12.tar.bz2</action>
+                <action type="shell_command">make</action>
+                <action type="move_file">
+                    <source>bwa</source>
+                    <destination>$INSTALL_DIR/bin</destination>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+    </package>
+</tool_dependency>