Mercurial > repos > iuc > package_blast_plus_2_5_0

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planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/packages/package_blast_plus_2_5_0/ commit 5e6ab3f9d02834b8be7cb93aced77956c51cdecc
author peterjc
date Fri, 02 Dec 2016 06:36:06 -0500
parents 387ac9bf0727
children
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0:387ac9bf0727 1:de5976f2c96d
3 <package name="blast" version="2.5.0"> 3 <package name="blast" version="2.5.0">
4 <install version="1.0"> 4 <install version="1.0">
5 <actions_group> 5 <actions_group>
6 <!-- Download the binaries for BLAST+ compatible with 64-bit OSX. --> 6 <!-- Download the binaries for BLAST+ compatible with 64-bit OSX. -->
7 <actions os="darwin" architecture="x86_64"> 7 <actions os="darwin" architecture="x86_64">
8 <!-- Original URL ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.5.0/ncbi-blast-2.5.0+-universal-macosx.tar.gz --> 8 <!-- Original URL ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.5.0/ncbi-blast-2.5.0+-x64-macosx.tar.gz -->
9 <action type="download_by_url" sha256sum="a446a18eec900cfd821a754bd984f6fe7076341801ece5ca40cbcddde7d0ca72" target_filename="ncbi-blast-2.5.0+-universal-macosx.tar.gz">https://depot.galaxyproject.org/software/blast_plus/blast_plus_2.5.0_darwin_all.tar.gz</action> 9 <action type="download_by_url" sha256sum="a446a18eec900cfd821a754bd984f6fe7076341801ece5ca40cbcddde7d0ca72" target_filename="ncbi-blast-2.5.0+-x64-macosx.tar.gz">https://depot.galaxyproject.org/software/blast_plus/blast_plus_2.5.0_darwin_x64.tar.gz</action>
10 <action type="move_directory_files"> 10 <action type="move_directory_files">
11 <source_directory>bin</source_directory> 11 <source_directory>bin</source_directory>
12 <destination_directory>$INSTALL_DIR</destination_directory> 12 <destination_directory>$INSTALL_DIR</destination_directory>
13 </action> 13 </action>
14 </actions>
15 <!-- Download the binaries for BLAST+ compatible with 32-bit OSX. -->
16 <actions os="darwin" architecture="i386">
17 <!-- Original URL ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.5.0/ncbi-blast-2.5.0+-universal-macosx.tar.gz -->
18 <action type="download_by_url" sha256sum="a446a18eec900cfd821a754bd984f6fe7076341801ece5ca40cbcddde7d0ca72" target_filename="ncbi-blast-2.5.0+-universal-macosx.tar.gz">https://depot.galaxyproject.org/software/blast_plus/blast_plus_2.5.0_darwin_all.tar.gz</action>
19 <action type="move_directory_files">
20 <source_directory>bin</source_directory>
21 <destination_directory>$INSTALL_DIR</destination_directory>
22 </action>
23 </actions> 14 </actions>
24 <!-- Download the binaries for BLAST+ compatible with 64-bit Linux. --> 15 <!-- Download the binaries for BLAST+ compatible with 64-bit Linux. -->
25 <actions os="linux" architecture="x86_64"> 16 <actions os="linux" architecture="x86_64">
26 <!-- Original URL ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.5.0/ncbi-blast-2.5.0+-x64-linux.tar.gz --> 17 <!-- Original URL ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.5.0/ncbi-blast-2.5.0+-x64-linux.tar.gz -->
27 <action type="download_by_url" sha256sum="d7006968b527fc151db9d6e58c3ad3235f0b04d9769dcb1a49f3eeb9303b84ac" target_filename="ncbi-blast-2.5.0+-x64-linux.tar.gz">https://depot.galaxyproject.org/software/blast_plus/blast_plus_2.5.0_linux_x64.tar.gz</action> 18 <action type="download_by_url" sha256sum="d7006968b527fc151db9d6e58c3ad3235f0b04d9769dcb1a49f3eeb9303b84ac" target_filename="ncbi-blast-2.5.0+-x64-linux.tar.gz">https://depot.galaxyproject.org/software/blast_plus/blast_plus_2.5.0_linux_x64.tar.gz</action>
29 <source_directory>bin</source_directory> 20 <source_directory>bin</source_directory>
30 <destination_directory>$INSTALL_DIR</destination_directory> 21 <destination_directory>$INSTALL_DIR</destination_directory>
31 </action> 22 </action>
32 </actions> 23 </actions>
33 <actions> 24 <actions>
34 <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported."</action> 25 <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not supported."</action>
35 <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action> 26 <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action>
36 <action type="shell_command">uname</action> 27 <action type="shell_command">uname</action>
37 <action type="shell_command">arch</action> 28 <action type="shell_command">arch</action>
38 <action type="shell_command">echo "Please report this via https://github.com/peterjc/galaxy_blast/issues - thank you!"</action> 29 <action type="shell_command">echo "Please report this via https://github.com/peterjc/galaxy_blast/issues - thank you!"</action>
39 <action type="shell_command">false</action> 30 <action type="shell_command">false</action>
50 Downloads the precompiled 64 bit Linux, or Mac OS X BLAST+ binaries from the NCBI, 41 Downloads the precompiled 64 bit Linux, or Mac OS X BLAST+ binaries from the NCBI,
51 which is faster than performing a local compilation, avoids any issues with build 42 which is faster than performing a local compilation, avoids any issues with build
52 dependencies, and is more reproducible between installations as there is no 43 dependencies, and is more reproducible between installations as there is no
53 variability from the compiler or library versions. 44 variability from the compiler or library versions.
54 45
55 Note that NCBI do not provide 32 bit Linux binaries anymore. 46 Note that NCBI do not provide any 32 bit binaries anymore.
56 47
57 For more details, see: 48 For more details, see:
58 http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&amp;PAGE_TYPE=BlastDocs&amp;DOC_TYPE=Download 49 http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&amp;PAGE_TYPE=BlastDocs&amp;DOC_TYPE=Download
59 </readme> 50 </readme>
60 </package> 51 </package>