Mercurial > repos > iuc > package_blast_plus_2_5_0
annotate tool_dependencies.xml @ 1:de5976f2c96d draft default tip
planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/packages/package_blast_plus_2_5_0/ commit 5e6ab3f9d02834b8be7cb93aced77956c51cdecc
| author | peterjc |
|---|---|
| date | Fri, 02 Dec 2016 06:36:06 -0500 |
| parents | 387ac9bf0727 |
| children |
| rev | line source |
|---|---|
| 0 | 1 <?xml version='1.0' encoding='utf-8'?> |
| 2 <tool_dependency> | |
| 3 <package name="blast" version="2.5.0"> | |
| 4 <install version="1.0"> | |
| 5 <actions_group> | |
| 6 <!-- Download the binaries for BLAST+ compatible with 64-bit OSX. --> | |
| 7 <actions os="darwin" architecture="x86_64"> | |
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de5976f2c96d
planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/packages/package_blast_plus_2_5_0/ commit 5e6ab3f9d02834b8be7cb93aced77956c51cdecc
peterjc
parents:
0
diff
changeset
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8 <!-- Original URL ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.5.0/ncbi-blast-2.5.0+-x64-macosx.tar.gz --> |
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de5976f2c96d
planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/packages/package_blast_plus_2_5_0/ commit 5e6ab3f9d02834b8be7cb93aced77956c51cdecc
peterjc
parents:
0
diff
changeset
|
9 <action type="download_by_url" sha256sum="a446a18eec900cfd821a754bd984f6fe7076341801ece5ca40cbcddde7d0ca72" target_filename="ncbi-blast-2.5.0+-x64-macosx.tar.gz">https://depot.galaxyproject.org/software/blast_plus/blast_plus_2.5.0_darwin_x64.tar.gz</action> |
| 0 | 10 <action type="move_directory_files"> |
| 11 <source_directory>bin</source_directory> | |
| 12 <destination_directory>$INSTALL_DIR</destination_directory> | |
| 13 </action> | |
| 14 </actions> | |
| 15 <!-- Download the binaries for BLAST+ compatible with 64-bit Linux. --> | |
| 16 <actions os="linux" architecture="x86_64"> | |
| 17 <!-- Original URL ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.5.0/ncbi-blast-2.5.0+-x64-linux.tar.gz --> | |
| 18 <action type="download_by_url" sha256sum="d7006968b527fc151db9d6e58c3ad3235f0b04d9769dcb1a49f3eeb9303b84ac" target_filename="ncbi-blast-2.5.0+-x64-linux.tar.gz">https://depot.galaxyproject.org/software/blast_plus/blast_plus_2.5.0_linux_x64.tar.gz</action> | |
| 19 <action type="move_directory_files"> | |
| 20 <source_directory>bin</source_directory> | |
| 21 <destination_directory>$INSTALL_DIR</destination_directory> | |
| 22 </action> | |
| 23 </actions> | |
| 24 <actions> | |
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de5976f2c96d
planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/packages/package_blast_plus_2_5_0/ commit 5e6ab3f9d02834b8be7cb93aced77956c51cdecc
peterjc
parents:
0
diff
changeset
|
25 <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not supported."</action> |
| 0 | 26 <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action> |
| 27 <action type="shell_command">uname</action> | |
| 28 <action type="shell_command">arch</action> | |
| 29 <action type="shell_command">echo "Please report this via https://github.com/peterjc/galaxy_blast/issues - thank you!"</action> | |
| 30 <action type="shell_command">false</action> | |
| 31 <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install --> | |
| 32 </actions> | |
| 33 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. --> | |
| 34 <action type="set_environment"> | |
| 35 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> | |
| 36 <environment_variable name="BLAST_ROOT_DIR" action="set_to">$INSTALL_DIR</environment_variable> | |
| 37 </action> | |
| 38 </actions_group> | |
| 39 </install> | |
| 40 <readme> | |
| 41 Downloads the precompiled 64 bit Linux, or Mac OS X BLAST+ binaries from the NCBI, | |
| 42 which is faster than performing a local compilation, avoids any issues with build | |
| 43 dependencies, and is more reproducible between installations as there is no | |
| 44 variability from the compiler or library versions. | |
| 45 | |
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1
de5976f2c96d
planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/packages/package_blast_plus_2_5_0/ commit 5e6ab3f9d02834b8be7cb93aced77956c51cdecc
peterjc
parents:
0
diff
changeset
|
46 Note that NCBI do not provide any 32 bit binaries anymore. |
| 0 | 47 |
| 48 For more details, see: | |
| 49 http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download | |
| 50 </readme> | |
| 51 </package> | |
| 52 </tool_dependency> |