Mercurial > repos > iuc > package_blast_plus_2_2_31
diff tool_dependencies.xml @ 1:c0c4580bee85 draft
planemo upload for repository https://github.com/peterjc/galaxy_blast/packages/package_blast_plus_2_2_31 commit 883c08829881671274c0a6ccb11046c6f5eadd9c
| author | peterjc |
|---|---|
| date | Thu, 24 Sep 2015 05:41:18 -0400 |
| parents | a2b8e3898680 |
| children | 4df9cdbc6e61 |
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--- a/tool_dependencies.xml Sat Jul 04 08:56:53 2015 -0400 +++ b/tool_dependencies.xml Thu Sep 24 05:41:18 2015 -0400 @@ -27,23 +27,6 @@ <destination_directory>$INSTALL_DIR</destination_directory> </action> </actions> - <!-- Download the binaries for BLAST+ compatible with 32-bit Linux (i386). --> - <actions os="linux" architecture="i386"> - <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.31/ncbi-blast-2.2.31+-ia32-linux.tar.gz</action> - <action type="move_directory_files"> - <source_directory>bin</source_directory> - <destination_directory>$INSTALL_DIR</destination_directory> - </action> - </actions> - <!-- Download the binaries for BLAST+ compatible with 32-bit Linux (i686). --> - <actions os="linux" architecture="i686"> - <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.31/ncbi-blast-2.2.31+-ia32-linux.tar.gz</action> - <action type="move_directory_files"> - <source_directory>bin</source_directory> - <destination_directory>$INSTALL_DIR</destination_directory> - </action> - </actions> - <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. --> <actions> <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported."</action> <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action> @@ -61,10 +44,12 @@ </actions_group> </install> <readme> -Downloads the precompiled 32bit Linux, 64bit Linux, or Mac OS X BLAST+ -binaries from the NCBI, which is faster than performing a local compliation, -avoids any issues with build dependencies, and is more reproducible between -installations as there is no variability from the compiler or library versions. +Downloads the precompiled 64 bit Linux, or Mac OS X BLAST+ binaries from the NCBI, +which is faster than performing a local compliation, avoids any issues with build +dependencies, and is more reproducible between installations as there is no +variability from the compiler or library versions. + +Note that as of BLAST+ 2.2.31 the NCBI do not provide 32 bit Linux binaries. For more details, see: http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download