Mercurial > repos > iuc > package_blast_plus_2_2_31

comparison tool_dependencies.xml @ 1:c0c4580bee85 draft

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planemo upload for repository https://github.com/peterjc/galaxy_blast/packages/package_blast_plus_2_2_31 commit 883c08829881671274c0a6ccb11046c6f5eadd9c
author peterjc
date Thu, 24 Sep 2015 05:41:18 -0400
parents a2b8e3898680
children 4df9cdbc6e61
comparison
equal deleted inserted replaced
0:a2b8e3898680 1:c0c4580bee85
25 <action type="move_directory_files"> 25 <action type="move_directory_files">
26 <source_directory>bin</source_directory> 26 <source_directory>bin</source_directory>
27 <destination_directory>$INSTALL_DIR</destination_directory> 27 <destination_directory>$INSTALL_DIR</destination_directory>
28 </action> 28 </action>
29 </actions> 29 </actions>
30 <!-- Download the binaries for BLAST+ compatible with 32-bit Linux (i386). -->
31 <actions os="linux" architecture="i386">
32 <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.31/ncbi-blast-2.2.31+-ia32-linux.tar.gz</action>
33 <action type="move_directory_files">
34 <source_directory>bin</source_directory>
35 <destination_directory>$INSTALL_DIR</destination_directory>
36 </action>
37 </actions>
38 <!-- Download the binaries for BLAST+ compatible with 32-bit Linux (i686). -->
39 <actions os="linux" architecture="i686">
40 <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.31/ncbi-blast-2.2.31+-ia32-linux.tar.gz</action>
41 <action type="move_directory_files">
42 <source_directory>bin</source_directory>
43 <destination_directory>$INSTALL_DIR</destination_directory>
44 </action>
45 </actions>
46 <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. -->
47 <actions> 30 <actions>
48 <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported."</action> 31 <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported."</action>
49 <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action> 32 <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action>
50 <action type="shell_command">uname</action> 33 <action type="shell_command">uname</action>
51 <action type="shell_command">arch</action> 34 <action type="shell_command">arch</action>
59 <environment_variable name="BLAST_ROOT_DIR" action="set_to">$INSTALL_DIR</environment_variable> 42 <environment_variable name="BLAST_ROOT_DIR" action="set_to">$INSTALL_DIR</environment_variable>
60 </action> 43 </action>
61 </actions_group> 44 </actions_group>
62 </install> 45 </install>
63 <readme> 46 <readme>
64 Downloads the precompiled 32bit Linux, 64bit Linux, or Mac OS X BLAST+ 47 Downloads the precompiled 64 bit Linux, or Mac OS X BLAST+ binaries from the NCBI,
65 binaries from the NCBI, which is faster than performing a local compliation, 48 which is faster than performing a local compliation, avoids any issues with build
66 avoids any issues with build dependencies, and is more reproducible between 49 dependencies, and is more reproducible between installations as there is no
67 installations as there is no variability from the compiler or library versions. 50 variability from the compiler or library versions.
51
52 Note that as of BLAST+ 2.2.31 the NCBI do not provide 32 bit Linux binaries.
68 53
69 For more details, see: 54 For more details, see:
70 http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&amp;PAGE_TYPE=BlastDocs&amp;DOC_TYPE=Download 55 http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&amp;PAGE_TYPE=BlastDocs&amp;DOC_TYPE=Download
71 </readme> 56 </readme>
72 </package> 57 </package>