package_blast_plus_2_2_27: tool_dependencies.xml annotate

annotate tool_dependencies.xml @ 3:4a8a61d680fa draft

planemo upload for repository https://github.com/peterjc/galaxy_blast/packages/package_blast_plus_2_2_27 commit 063f4151ba912a5a2b2fd9cc5d801d5d86be36c0

author	peterjc
date	Wed, 30 Sep 2015 08:46:01 -0400
parents	50f9eeba02ea
children	44fa0f193887

rev	line source
1 eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	1 <?xml version='1.0' encoding='utf-8'?>
0 fadc499c3892 Uploaded definition based on that for BLAST+ 2.2.26 peterjc parents: diff changeset	2 <tool_dependency>
fadc499c3892 Uploaded definition based on that for BLAST+ 2.2.26 peterjc parents: diff changeset	3 <package name="blast+" version="2.2.27">
fadc499c3892 Uploaded definition based on that for BLAST+ 2.2.26 peterjc parents: diff changeset	4 <install version="1.0">
1 eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	5 <actions_group>
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	6 <!-- Download the binaries for BLAST+ compatible with 64-bit OSX. -->
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	7 <actions os="darwin" architecture="x86_64">
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	8 <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.27/ncbi-blast-2.2.27+-universal-macosx.tar.gz</action>
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	9 <action type="move_directory_files">
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	10 <source_directory>bin</source_directory>
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	11 <destination_directory>$INSTALL_DIR</destination_directory>
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	12 </action>
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	13 </actions>
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	14 <!-- Download the binaries for BLAST+ compatible with 32-bit OSX. -->
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	15 <actions os="darwin" architecture="i386">
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	16 <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.27/ncbi-blast-2.2.27+-universal-macosx.tar.gz</action>
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	17 <action type="move_directory_files">
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	18 <source_directory>bin</source_directory>
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	19 <destination_directory>$INSTALL_DIR</destination_directory>
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	20 </action>
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	21 </actions>
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	22 <!-- Download the binaries for BLAST+ compatible with 64-bit Linux. -->
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	23 <actions os="linux" architecture="x86_64">
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	24 <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.27/ncbi-blast-2.2.27+-x64-linux.tar.gz</action>
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	25 <action type="move_directory_files">
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	26 <source_directory>bin</source_directory>
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	27 <destination_directory>$INSTALL_DIR</destination_directory>
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	28 </action>
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	29 </actions>
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	30 <!-- Download the binaries for BLAST+ compatible with 32-bit Linux (i386). -->
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	31 <actions os="linux" architecture="i386">
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	32 <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.27/ncbi-blast-2.2.27+-ia32-linux.tar.gz</action>
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	33 <action type="move_directory_files">
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	34 <source_directory>bin</source_directory>
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	35 <destination_directory>$INSTALL_DIR</destination_directory>
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	36 </action>
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	37 </actions>
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	38 <!-- Download the binaries for BLAST+ compatible with 32-bit Linux (i686). -->
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	39 <actions os="linux" architecture="i686">
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	40 <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.27/ncbi-blast-2.2.27+-ia32-linux.tar.gz</action>
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	41 <action type="move_directory_files">
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	42 <source_directory>bin</source_directory>
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	43 <destination_directory>$INSTALL_DIR</destination_directory>
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	44 </action>
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	45 </actions>
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	46 <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. -->
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	47 <actions>
2 50f9eeba02ea Fixed bash syntax error in fall back messages peterjc parents: 1 diff changeset	48 <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported."</action>
50f9eeba02ea Fixed bash syntax error in fall back messages peterjc parents: 1 diff changeset	49 <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action>
1 eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	50 <action type="shell_command">uname</action>
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	51 <action type="shell_command">arch</action>
2 50f9eeba02ea Fixed bash syntax error in fall back messages peterjc parents: 1 diff changeset	52 <action type="shell_command">echo "Please report this via https://github.com/peterjc/galaxy_blast/issues - thank you!"</action>
1 eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	53 <action type="shell_command">false</action>
2 50f9eeba02ea Fixed bash syntax error in fall back messages peterjc parents: 1 diff changeset	54 <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install -->
1 eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	55 </actions>
eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	56 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. -->
0 fadc499c3892 Uploaded definition based on that for BLAST+ 2.2.26 peterjc parents: diff changeset	57 <action type="set_environment">
fadc499c3892 Uploaded definition based on that for BLAST+ 2.2.26 peterjc parents: diff changeset	58 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
fadc499c3892 Uploaded definition based on that for BLAST+ 2.2.26 peterjc parents: diff changeset	59 </action>
1 eab09bc4d63e Uploaded update using uname/arch specific actions instead of shell script peterjc parents: 0 diff changeset	60 </actions_group>
0 fadc499c3892 Uploaded definition based on that for BLAST+ 2.2.26 peterjc parents: diff changeset	61 </install>
fadc499c3892 Uploaded definition based on that for BLAST+ 2.2.26 peterjc parents: diff changeset	62 <readme>
fadc499c3892 Uploaded definition based on that for BLAST+ 2.2.26 peterjc parents: diff changeset	63 Downloads the precompiled 32bit Linux, 64bit Linux, or Mac OS X BLAST+
3 4a8a61d680fa planemo upload for repository https://github.com/peterjc/galaxy_blast/packages/package_blast_plus_2_2_27 commit 063f4151ba912a5a2b2fd9cc5d801d5d86be36c0 peterjc parents: 2 diff changeset	64 binaries from the NCBI, which is faster than performing a local compilation,
0 fadc499c3892 Uploaded definition based on that for BLAST+ 2.2.26 peterjc parents: diff changeset	65 avoids any issues with build dependencies, and is more reproducible between
fadc499c3892 Uploaded definition based on that for BLAST+ 2.2.26 peterjc parents: diff changeset	66 installations as there is no variability from the compiler or library versions.
fadc499c3892 Uploaded definition based on that for BLAST+ 2.2.26 peterjc parents: diff changeset	67
fadc499c3892 Uploaded definition based on that for BLAST+ 2.2.26 peterjc parents: diff changeset	68 For more details, see:
fadc499c3892 Uploaded definition based on that for BLAST+ 2.2.26 peterjc parents: diff changeset	69 http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download
fadc499c3892 Uploaded definition based on that for BLAST+ 2.2.26 peterjc parents: diff changeset	70 </readme>
fadc499c3892 Uploaded definition based on that for BLAST+ 2.2.26 peterjc parents: diff changeset	71 </package>
fadc499c3892 Uploaded definition based on that for BLAST+ 2.2.26 peterjc parents: diff changeset	72 </tool_dependency>

Mercurial > repos > iuc > package_blast_plus_2_2_27

annotate tool_dependencies.xml @ 3:4a8a61d680fa draft