diff esearch.xml @ 1:6d1aba0b33e1 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 2d92a2be8d8725e76a32600e332dfb67cc0db10b
author iuc
date Mon, 02 Nov 2015 12:59:56 -0500
parents 6ba298236729
children 0ea34f262410
line wrap: on
line diff
--- a/esearch.xml	Sat Oct 31 12:45:19 2015 -0400
+++ b/esearch.xml	Mon Nov 02 12:59:56 2015 -0500
@@ -5,14 +5,13 @@
     <import>macros.xml</import>
   </macros>
   <expand macro="requirements"/>
-  <expand macro="stdio"/>
   <version_command>python esearch.py --version</version_command>
-  <command interpreter="python"><![CDATA[esearch.py
+  <command detect_errors="aggressive" interpreter="python"><![CDATA[esearch.py
 $db_select
 "$term"
 
 #if $history_file and $history_file is not None:
---history_file $history_file
+    --history_file $history_file
 #end if
 
 $use_history
@@ -34,7 +33,7 @@
 #end if
 
 #if $use_history:
---history_out $history
+    --history_out $history
 #end if
 
 @EMAIL_ARGUMENTS@
@@ -50,7 +49,7 @@
         </valid>
       </sanitizer>
     </param>
-    <param label="Filter existing history" name="history_file" type="data" format="ncbi_history" optional="True"/>
+    <param label="Filter existing history" name="history_file" type="data" format="json" optional="True"/>
     <param checked="false" label="Store results to history server" name="use_history" type="boolean" truevalue="--use_history" falsevalue=""/>
     <conditional name="date">
       <param label="Filter By Date" type="boolean" truevalue="True" falsevalue="False" checked="false" name="enabled"/>