Mercurial > repos > iuc > ncbi_eutils_epost

diff epost.xml @ 0:6defb4c34d01 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
author iuc
date Sat, 31 Oct 2015 12:44:41 -0400
parents
children 229a09be31fe
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/epost.xml	Sat Oct 31 12:44:41 2015 -0400
@@ -0,0 +1,46 @@
+<?xml version="1.0"?>
+<tool id="ncbi_eutils_epost" name="NCBI EPost" version="@WRAPPER_VERSION@">
+  <description>post UIDs to NCBI History Server</description>
+  <macros>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="requirements"/>
+  <expand macro="stdio"/>
+  <version_command>python epost.py --version</version_command>
+  <command interpreter="python"><![CDATA[epost.py
+$db_select
+
+@EMAIL_ARGUMENTS@
+
+@LIST_OR_HIST@
+
+> $history
+]]></command>
+  <inputs>
+    <expand macro="dbselect"/>
+    <expand macro="list_or_hist"/>
+  </inputs>
+  <outputs>
+    <expand macro="history_out"/>
+  </outputs>
+  <tests>
+    <test>
+      <param name="db_select" value="nuccore"/>
+      <param name="qss" value="id_list"/>
+      <param name="id_list" value="126697566"/>
+      <output name="history" file="example.history.json" compare="sim_size" delta="10"/>
+    </test>
+  </tests>
+  <help><![CDATA[
+NCBI Entrez EPost
+=================
+
+Accepts a list of UIDs from a given database, stores the set on the History
+Server, and responds with an NCBI History reference.
+
+@REFERENCES@
+
+@DISCLAIMER@
+      ]]></help>
+  <expand macro="citations"/>
+</tool>