Mercurial > repos > iuc > ncbi_eutils_elink
annotate elink.xml @ 14:06e12680392f draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 851b88d92fa7740880a5edf407f629bf3f7f7bf0
| author | iuc |
|---|---|
| date | Fri, 04 Oct 2024 14:33:46 +0000 |
| parents | 1d3860bffc54 |
| children |
| rev | line source |
|---|---|
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31ead684598f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit db33413a06c275efd4cc8e771c37facf543a2cfa"
iuc
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1 <tool id="ncbi_eutils_elink" name="NCBI ELink" version="@WRAPPER_VERSION@" profile="@PROFILE@"> |
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0
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
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2 <description>link UIDs from one database to another</description> |
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ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
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3 <macros> |
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ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
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4 <import>macros.xml</import> |
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ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
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5 </macros> |
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ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
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6 <expand macro="requirements"/> |
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ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
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7 <version_command>python elink.py --version</version_command> |
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7
31ead684598f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit db33413a06c275efd4cc8e771c37facf543a2cfa"
iuc
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8 <command detect_errors="aggressive"><![CDATA[ |
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31ead684598f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit db33413a06c275efd4cc8e771c37facf543a2cfa"
iuc
parents:
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9 python '$__tool_directory__/elink.py' |
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0
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
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10 |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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11 @LINK_TOKEN@ |
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0
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
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12 |
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ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
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13 @EMAIL_ARGUMENTS@ |
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ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
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14 |
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ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
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15 @LIST_OR_HIST@ |
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ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
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16 |
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ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
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17 > $default]]></command> |
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ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
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18 <inputs> |
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ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
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19 <expand macro="list_or_hist"/> |
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8
3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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20 <expand macro="linkmacro"/> |
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0
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
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21 </inputs> |
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ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
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22 <outputs> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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23 <data format="xml" name="default" label="NCBI ${cmd.cmd_select} Links From ${cmd.db_from_link.db_select_from_link} To ${cmd.db_from_link.db_to.db_select_to} Via ${cmd.db_from_link.db_to.linkname}"> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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24 <change_format> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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25 <when input="cmd.output_format" value="xml" format="xml" /> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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26 <when input="cmd.output_format" value="json" format="json" /> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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27 <when input="cmd.output_format" value="text" format="tabular" /> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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28 </change_format> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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29 <filter>query_source['qss'] != 'history_json' and query_source['qss'] != 'history_xml'</filter> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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30 </data> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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31 <collection name="linksets" type="list" label="NCBI ${cmd.cmd_select} Links From ${cmd.db_from_link.db_select_from_link} To ${cmd.db_from_link.db_to.db_select_to} Via All"> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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32 <discover_datasets pattern="__designation_and_ext__" directory="downloads"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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33 <filter>query_source['qss'] == 'history_json' or query_source['qss'] == 'history_xml'</filter> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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34 </collection> |
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0
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
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35 </outputs> |
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ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
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36 <tests> |
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deb9b831d7df
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dd9b889d83f058d2ddb87a4e7709ee3d93dddd69"
iuc
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37 <test expect_num_outputs="1"> |
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0
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
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38 <param name="cmd_select" value="neighbor"/> |
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ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
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39 <param name="db_select_to" value="pubmed"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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40 <param name="db_select_from_link" value="taxonomy"/> |
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0
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
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41 <param name="qss" value="id_list"/> |
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ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
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42 <param name="id_list" value="510899"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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43 <param name="output_format" value="xml"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
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44 <param name="linkname" value="None"/> |
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0ea9815942d2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 15bcc5104c577b4b9c761f2854fc686c07ffa9db
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45 <output name="default" file="pm-tax-neighbor.xml" ftype="xml"/> |
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0
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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46 </test> |
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deb9b831d7df
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dd9b889d83f058d2ddb87a4e7709ee3d93dddd69"
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47 <test expect_num_outputs="1"> |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
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48 <param name="cmd_select" value="neighbor"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
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49 <param name="db_select_to" value="nuccore"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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50 <param name="db_select_from_link" value="gene"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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51 <param name="qss" value="id_xml"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
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52 <param name="id_xml" value="elink.esearch_in_xmlid.xml"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
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53 <param name="output_format" value="text"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
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54 <param name="linkname" value="gene_nuccore"/> |
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1d3860bffc54
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit b399ac5996d8225353d3abaff58eb986da5545d7"
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55 <output name="default" ftype="tabular"> |
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1d3860bffc54
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit b399ac5996d8225353d3abaff58eb986da5545d7"
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56 <assert_contents> |
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1d3860bffc54
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit b399ac5996d8225353d3abaff58eb986da5545d7"
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57 <has_line line="1899688395"/> |
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1d3860bffc54
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit b399ac5996d8225353d3abaff58eb986da5545d7"
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58 <has_line line="1896832511"/> |
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1d3860bffc54
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit b399ac5996d8225353d3abaff58eb986da5545d7"
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59 </assert_contents> |
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1d3860bffc54
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit b399ac5996d8225353d3abaff58eb986da5545d7"
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60 </output> |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
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61 </test> |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dd9b889d83f058d2ddb87a4e7709ee3d93dddd69"
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62 <test expect_num_outputs="1"> |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
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63 <param name="cmd_select" value="neighbor"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
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64 <param name="db_select_to" value="nuccore"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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65 <param name="db_select_from_link" value="gene"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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66 <param name="qss" value="id_json"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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67 <param name="id_json" value="elink.esearchin_id.json"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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68 <param name="output_format" value="json"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
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69 <param name="linkname" value="None"/> |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dd9b889d83f058d2ddb87a4e7709ee3d93dddd69"
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70 <output name="default" ftype="json"> |
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deb9b831d7df
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dd9b889d83f058d2ddb87a4e7709ee3d93dddd69"
iuc
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71 <assert_contents> |
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deb9b831d7df
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dd9b889d83f058d2ddb87a4e7709ee3d93dddd69"
iuc
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|
72 <has_text text="gene_nuccore_refseqrna"/> |
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deb9b831d7df
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dd9b889d83f058d2ddb87a4e7709ee3d93dddd69"
iuc
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diff
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|
73 <has_text text="gene_nuccore"/> |
|
deb9b831d7df
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dd9b889d83f058d2ddb87a4e7709ee3d93dddd69"
iuc
parents:
8
diff
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|
74 <has_text text="1899688395"/> |
|
deb9b831d7df
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dd9b889d83f058d2ddb87a4e7709ee3d93dddd69"
iuc
parents:
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diff
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|
75 </assert_contents> |
|
deb9b831d7df
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dd9b889d83f058d2ddb87a4e7709ee3d93dddd69"
iuc
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76 </output> |
|
8
3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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77 </test> |
|
10
deb9b831d7df
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dd9b889d83f058d2ddb87a4e7709ee3d93dddd69"
iuc
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78 <test expect_num_outputs="1"> |
|
8
3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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79 <param name="cmd_select" value="neighbor"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
parents:
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diff
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80 <param name="db_select_to" value="nuccore"/> |
|
3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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81 <param name="db_select_from_link" value="gene"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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|
82 <param name="qss" value="id_file"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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83 <param name="id_file" value="elink.esearchin_id.tabular"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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84 <param name="output_format" value="xml"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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85 <param name="linkname" value="gene_nuccore_refseqrna"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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86 <output name="default" file="elink.esearchin_id_1link.xml" ftype="xml"/> |
|
3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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87 </test> |
|
10
deb9b831d7df
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dd9b889d83f058d2ddb87a4e7709ee3d93dddd69"
iuc
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88 <test expect_num_outputs="1"> |
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8
3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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89 <param name="cmd_select" value="neighbor_history"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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90 <param name="db_select_to" value="gene"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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91 <param name="db_select_from_link" value="nuccore"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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92 <param name="qss" value="id_json"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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93 <param name="id_json" value="elink.elinkin_1link.json"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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94 <param name="output_format" value="json"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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95 <param name="linkname" value="nuccore_gene"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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96 <output name="default" file="elink.elinkin_1link_hist.json" ftype="json" lines_diff="2"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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97 </test> |
|
10
deb9b831d7df
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dd9b889d83f058d2ddb87a4e7709ee3d93dddd69"
iuc
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98 <test expect_num_outputs="1"> |
|
8
3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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99 <param name="cmd_select" value="neighbor_history"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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100 <param name="db_select_to" value="gene"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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101 <param name="db_select_from_link" value="nuccore"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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102 <param name="qss" value="id_xml"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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103 <param name="id_xml" value="elink.elinkin_alllinks_id.xml"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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104 <param name="output_format" value="xml"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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105 <param name="linkname" value="nuccore_gene"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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106 <output name="default" file="elink.elinkin_allalllinks_id.xml" ftype="xml" lines_diff="2"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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107 </test> |
|
10
deb9b831d7df
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dd9b889d83f058d2ddb87a4e7709ee3d93dddd69"
iuc
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108 <test expect_num_outputs="1"> |
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8
3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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109 <param name="cmd_select" value="neighbor_score"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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110 <param name="db_select_to" value="gene"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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111 <param name="db_select_from_link" value="nuccore"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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112 <param name="qss" value="id_list"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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113 <param name="id_list" value="1899688395"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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114 <param name="output_format" value="text"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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115 <param name="linkname" value="nuccore_gene"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
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116 <output name="default" file="elink.elinkin_1link_id.tabular" ftype="tabular"/> |
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3d7e06fd1c7f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
iuc
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117 </test> |
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0
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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118 </tests> |
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ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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119 <help><![CDATA[ |
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ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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120 NCBI Entrez ELink |
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ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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121 ================= |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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122 |
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ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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123 Responds to a list of UIDs in a given database with either a list of related |
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ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
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124 UIDs (and relevancy scores) in the same database or a list of linked UIDs in |
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ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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125 another Entrez database; checks for the existence of a specified link from a |
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ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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126 list of one or more UIDs; creates a hyperlink to the primary LinkOut provider |
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ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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127 for a specific UID and database, or lists LinkOut URLs and attributes for |
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ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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128 multiple UIDs. |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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129 |
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130 Commands |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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131 -------- |
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ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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132 |
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133 Example Queries |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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134 --------------- |
|
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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135 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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136 Link from protein to gene |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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137 |
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ffc6d6234c8a
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138 +----------------------+--------------------------------------+ |
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ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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139 | Parameter | Value | |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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140 +======================+======================================+ |
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ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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141 | From NCBI Database | Protein | |
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ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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142 +----------------------+--------------------------------------+ |
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ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
143 | Elink Command | Neighbor | |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
144 +----------------------+--------------------------------------+ |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
145 | To NCBI Database | Gene | |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
146 +----------------------+--------------------------------------+ |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
147 | ID List | 15718680 157427902 | |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
148 +----------------------+--------------------------------------+ |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
149 |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
150 Find related articles to PMID 20210808 with scores |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
151 |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
152 +----------------------+--------------------------------------+ |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
153 | Parameter | Value | |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
154 +======================+======================================+ |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
155 | From NCBI Database | PubMed | |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
156 +----------------------+--------------------------------------+ |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
157 | Elink Command | Scored Neighbors | |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
158 +----------------------+--------------------------------------+ |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
159 | To NCBI Database | PubMed | |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
160 +----------------------+--------------------------------------+ |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
161 | ID List | 20210808 | |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
162 +----------------------+--------------------------------------+ |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
163 |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
164 List all possible links from two protein GIs |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
165 |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
166 +----------------------+--------------------------------------+ |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
167 | Parameter | Value | |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
168 +======================+======================================+ |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
169 | From NCBI Database | Protein | |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
170 +----------------------+--------------------------------------+ |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
171 | Elink Command | ACheck | |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
172 +----------------------+--------------------------------------+ |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
173 | ID List | 15718680 157427902 | |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
174 +----------------------+--------------------------------------+ |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
175 |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
176 List all possible links from two protein GIs to PubMed |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
177 |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
178 +----------------------+--------------------------------------+ |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
179 | Parameter | Value | |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
180 +======================+======================================+ |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
181 | From NCBI Database | Protein | |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
182 +----------------------+--------------------------------------+ |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
183 | Elink Command | ACheck | |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
184 +----------------------+--------------------------------------+ |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
185 | To NCBI Database | PubMed | |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
186 +----------------------+--------------------------------------+ |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
187 | ID List | 15718680 157427902 | |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
188 +----------------------+--------------------------------------+ |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
189 |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
190 Check whether two nuccore sequences have "related sequences" links. |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
191 |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
192 +----------------------+--------------------------------------+ |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
193 | Parameter | Value | |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
194 +======================+======================================+ |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
195 | From NCBI Database | Nuccore | |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
196 +----------------------+--------------------------------------+ |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
197 | Elink Command | NCheck | |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
198 +----------------------+--------------------------------------+ |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
199 | ID List | 21614549 219152114 | |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
200 +----------------------+--------------------------------------+ |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
201 |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
202 List the LinkOut URLs for non-library providers for two pubmed abstracts. |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
203 |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
204 +----------------------+--------------------------------------+ |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
205 | Parameter | Value | |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
206 +======================+======================================+ |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
207 | From NCBI Database | Pubmed | |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
208 +----------------------+--------------------------------------+ |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
209 | Elink Command | Links | |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
210 +----------------------+--------------------------------------+ |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
211 | ID List | 19880848 19822630 | |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
212 +----------------------+--------------------------------------+ |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
213 |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
214 Find links to full text providers for two PubMed abstracts. |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
215 |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
216 +----------------------+--------------------------------------+ |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
217 | Parameter | Value | |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
218 +======================+======================================+ |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
219 | From NCBI Database | Pubmed | |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff
changeset
|
220 +----------------------+--------------------------------------+ |
|
ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
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221 | Elink Command | Provider Links | |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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222 +----------------------+--------------------------------------+ |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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223 | ID List | 19880848 19822630 | |
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ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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224 +----------------------+--------------------------------------+ |
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ffc6d6234c8a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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225 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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226 @REFERENCES@ |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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227 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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228 @DISCLAIMER@ |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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229 ]]></help> |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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230 <expand macro="citations"/> |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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231 </tool> |