Mercurial > repos > iuc > ncbi_eutils_elink

annotate elink.xml @ 5:0ea9815942d2 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 15bcc5104c577b4b9c761f2854fc686c07ffa9db
author iuc
date Thu, 07 Jul 2016 02:38:23 -0400
parents 127515819562
children 31ead684598f
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1 <?xml version="1.0"?>
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2 <tool id="ncbi_eutils_elink" name="NCBI ELink" version="@WRAPPER_VERSION@">
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3 <description>link UIDs from one database to another</description>
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4 <macros>
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5 <import>macros.xml</import>
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6 </macros>
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7 <expand macro="requirements"/>
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8 <version_command>python elink.py --version</version_command>
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9 <command detect_errors="aggressive" interpreter="python"><![CDATA[elink.py
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10 #if $cmd.cmd_select in ('neighbor', 'neighbor_score', 'neighbor_history'):
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11 $cmd.db_select_to
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12 #else:
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13 "none"
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14 #end if
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16 $db_select_from
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17 $cmd.cmd_select
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19 @EMAIL_ARGUMENTS@
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21 @LIST_OR_HIST@
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23 #if $cmd.cmd_select == "neighbor_history":
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24 --history_out $history
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25 #end if
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27 > $default]]></command>
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28 <inputs>
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29 <expand macro="dbselect" name="db_select_from" label="From NCBI Database" />
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30 <conditional name="cmd">
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31 <param name="cmd_select" type="select" label="ELink command to execute">
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32 <option value="neighbor">Neighbor: Fetch a set of UIDs in DB linked to input UIDs in DBFROM</option>
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33 <option value="neighbor_score">Scored Neighbors: Fetch a set of UIDs within the same database as the input UIDs along with computed similarity scores</option>
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34 <option value="neighbor_history">Neighbor (history): Fetch a set of UIDs in DB linked to input UIDs from DBFROM, and store on history server</option>
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35 <option value="acheck">ACheck: List all links available from a set of UIDs</option>
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36 <option value="ncheck">NCheck: Check for the existence of links within the same database for a set of UIDs</option>
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37 <option value="lcheck">LCheck: Check for the existence of external links (LinkOuts) for a set of UIDs</option>
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38 <option value="llinks">Links: For each input UID, list the URLs and attributes for the LinkOut providers that are not libraries</option>
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39 <option value="llinkslib">LinksLib: For each input UID, list the URLs and attributes for the LinkOut providers (including libraries)</option>
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40 <option value="prlinks">Provider Links: List the primary LinkOut provider for each input UID</option>
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41 </param>
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42 <when value="neighbor">
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43 <expand macro="dbselect" name="db_select_to" label="To NCBI Database" />
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44 </when>
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45 <when value="neighbor_score">
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46 <expand macro="dbselect" name="db_select_to" label="To NCBI Database" />
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47 </when>
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48 <when value="neighbor_history">
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49 <expand macro="dbselect" name="db_select_to" label="To NCBI Database" />
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50 </when>
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51 <when value="acheck">
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52 <expand macro="dbselect" name="db_select_to" label="To NCBI Database" />
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53 </when>
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54 <when value="ncheck"/>
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55 <when value="lcheck"/>
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56 <when value="llinks"/>
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57 <when value="llinkslib"/>
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58 <when value="prlinks"/>
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59 </conditional>
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60 <expand macro="list_or_hist"/>
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61 </inputs>
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62 <outputs>
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63 <data format="xml" name="default" label="NCBI Linked IDs from $db_select_from"/>
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64 <expand macro="history_out">
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65 <filter>cmd['cmd_select'] == 'neighbor_history'</filter>
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66 </expand>
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67 </outputs>
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68 <tests>
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69 <test>
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70 <param name="cmd_select" value="neighbor"/>
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71 <param name="db_select_to" value="pubmed"/>
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72 <param name="db_select_from" value="taxonomy"/>
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73 <param name="qss" value="id_list"/>
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74 <param name="id_list" value="510899"/>
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75 <output name="default" file="pm-tax-neighbor.xml" ftype="xml"/>
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76 </test>
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77 </tests>
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78 <help><![CDATA[
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79 NCBI Entrez ELink
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80 =================
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81
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff changeset
82 Responds to a list of UIDs in a given database with either a list of related
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff changeset
83 UIDs (and relevancy scores) in the same database or a list of linked UIDs in
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff changeset
84 another Entrez database; checks for the existence of a specified link from a
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff changeset
85 list of one or more UIDs; creates a hyperlink to the primary LinkOut provider
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff changeset
86 for a specific UID and database, or lists LinkOut URLs and attributes for
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff changeset
87 multiple UIDs.
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff changeset
88
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff changeset
89 Commands
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff changeset
90 --------
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
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91
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff changeset
92 Example Queries
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
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93 ---------------
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
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94
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff changeset
95 Link from protein to gene
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
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96
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
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97 +----------------------+--------------------------------------+
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff changeset
98 | Parameter | Value |
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff changeset
99 +======================+======================================+
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff changeset
100 | From NCBI Database | Protein |
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff changeset
101 +----------------------+--------------------------------------+
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
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102 | Elink Command | Neighbor |
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
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103 +----------------------+--------------------------------------+
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff changeset
104 | To NCBI Database | Gene |
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
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105 +----------------------+--------------------------------------+
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
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106 | ID List | 15718680 157427902 |
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff changeset
107 +----------------------+--------------------------------------+
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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108
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
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109 Find related articles to PMID 20210808 with scores
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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110
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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111 +----------------------+--------------------------------------+
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
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112 | Parameter | Value |
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
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113 +======================+======================================+
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff changeset
114 | From NCBI Database | PubMed |
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
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115 +----------------------+--------------------------------------+
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff changeset
116 | Elink Command | Scored Neighbors |
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff changeset
117 +----------------------+--------------------------------------+
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff changeset
118 | To NCBI Database | PubMed |
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
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119 +----------------------+--------------------------------------+
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff changeset
120 | ID List | 20210808 |
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
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121 +----------------------+--------------------------------------+
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
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122
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff changeset
123 List all possible links from two protein GIs
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
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124
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
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125 +----------------------+--------------------------------------+
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
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126 | Parameter | Value |
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
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127 +======================+======================================+
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
diff changeset
128 | From NCBI Database | Protein |
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
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129 +----------------------+--------------------------------------+
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
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130 | Elink Command | ACheck |
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
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131 +----------------------+--------------------------------------+
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
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132 | ID List | 15718680 157427902 |
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
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133 +----------------------+--------------------------------------+
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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134
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
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135 List all possible links from two protein GIs to PubMed
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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136
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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137 +----------------------+--------------------------------------+
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
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diff changeset
138 | Parameter | Value |
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
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139 +======================+======================================+
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
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diff changeset
140 | From NCBI Database | Protein |
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
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141 +----------------------+--------------------------------------+
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
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142 | Elink Command | ACheck |
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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143 +----------------------+--------------------------------------+
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
parents:
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144 | To NCBI Database | PubMed |
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
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145 +----------------------+--------------------------------------+
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
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146 | ID List | 15718680 157427902 |
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
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147 +----------------------+--------------------------------------+
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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148
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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149 Check whether two nuccore sequences have "related sequences" links.
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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150
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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151 +----------------------+--------------------------------------+
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
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152 | Parameter | Value |
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
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153 +======================+======================================+
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
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154 | From NCBI Database | Nuccore |
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
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155 +----------------------+--------------------------------------+
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
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156 | Elink Command | NCheck |
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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157 +----------------------+--------------------------------------+
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
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158 | ID List | 21614549 219152114 |
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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159 +----------------------+--------------------------------------+
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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160
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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161 List the LinkOut URLs for non-library providers for two pubmed abstracts.
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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162
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163 +----------------------+--------------------------------------+
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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164 | Parameter | Value |
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
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165 +======================+======================================+
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
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166 | From NCBI Database | Pubmed |
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
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167 +----------------------+--------------------------------------+
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
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168 | Elink Command | Links |
ffc6d6234c8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
iuc
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169 +----------------------+--------------------------------------+
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170 | ID List | 19880848 19822630 |
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171 +----------------------+--------------------------------------+
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172
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173 Find links to full text providers for two PubMed abstracts.
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174
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175 +----------------------+--------------------------------------+
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176 | Parameter | Value |
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177 +======================+======================================+
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178 | From NCBI Database | Pubmed |
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179 +----------------------+--------------------------------------+
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180 | Elink Command | Provider Links |
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181 +----------------------+--------------------------------------+
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182 | ID List | 19880848 19822630 |
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183 +----------------------+--------------------------------------+
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184
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185 @REFERENCES@
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186
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187 @DISCLAIMER@
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188 ]]></help>
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189 <expand macro="citations"/>
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190 </tool>