Mercurial > repos > iuc > ncbi_eutils_egquery

comparison egquery.xml @ 0:22fed2340d2b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
author iuc
date Sat, 31 Oct 2015 12:45:31 -0400
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-1:000000000000 0:22fed2340d2b
1 <?xml version="1.0"?>
2 <tool id="ncbi_eutils_egquery" name="NCBI EGQuery" version="@WRAPPER_VERSION@">
3 <description>Provides the number of records retrieved in all Entrez databases by a single text query.</description>
4 <macros>
5 <import>macros.xml</import>
6 </macros>
7 <expand macro="requirements"/>
8 <expand macro="stdio"/>
9 <version_command>python egquery.py --version</version_command>
10 <command interpreter="python"><![CDATA[egquery.py
11 "$term"
12
13 @EMAIL_ARGUMENTS@
14 > $default]]></command>
15 <inputs>
16 <expand macro="dbselect"/>
17 <param label="Search Term" name="term" type="text">
18 <sanitizer>
19 <valid>
20 <add value="'"/>
21 <add value="["/>
22 <add value="]"/>
23 </valid>
24 </sanitizer>
25 </param>
26 </inputs>
27 <outputs>
28 <data format="xml" name="default" label="EGQuery Results for $term"/>
29 <expand macro="history_out">
30 <filter>use_history</filter>
31 </expand>
32 </outputs>
33 <tests>
34 <test>
35 <param name="term" value="bacteriophage"/>
36 <output name="default" file="egquery.1.xml" compare="sim_size"/>
37 </test>
38 </tests>
39 <help><![CDATA[
40 NCBI Entrez EGQuery
41 ===================
42
43 Provides the number of records retrieved in all Entrez databases by a single
44 text query.
45
46 Example Queries
47 ---------------
48
49 +----------------------+-------------+
50 | Parameter | Value |
51 +======================+=============+
52 | Term | Cancer |
53 +----------------------+-------------+
54
55 @REFERENCES@
56
57 @DISCLAIMER@
58 ]]></help>
59 <expand macro="citations"/>
60 </tool>