Mercurial > repos > iuc > ncbi_eutils_efetch

diff efetch.xml @ 5:e269b3b5185b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 15bcc5104c577b4b9c761f2854fc686c07ffa9db
author iuc
date Thu, 07 Jul 2016 02:37:49 -0400
parents c26d1863f3f3
children 2ff5369b4b51
line wrap: on
line diff
--- a/efetch.xml	Fri Jun 10 15:03:49 2016 -0400
+++ b/efetch.xml	Thu Jul 07 02:37:49 2016 -0400
@@ -19,18 +19,15 @@
 --rettype $rettype
 
 @EMAIL_ARGUMENTS@
-$whole
-> $default]]></command>
+]]></command>
   <inputs>
     <expand macro="db"/>
     <expand macro="list_or_hist"/>
-    <param checked="false" label="Download all records associated with query" name="whole" type="boolean" truevalue="--whole" falsevalue=""/>
   </inputs>
   <outputs>
-    <data format="txt" name="default" label="NCBI EFetch Results">
-      <discover_datasets pattern="__designation__.out" ext="txt"/>
-      <expand macro="efetch_formats" />
-    </data>
+    <collection type="list" label="NCBI EFetch Results" name="output1">
+      <discover_datasets pattern="__designation_and_ext__" directory="downloads"/>
+    </collection>
   </outputs>
   <tests>
     <test>
@@ -38,7 +35,9 @@
       <param name="output_format" value="full-xml"/>
       <param name="qss" value="id_list"/>
       <param name="id_list" value="10239"/>
-      <output name="default" file="viruses.tax.xml">
+      <output name="default">
+        <discovered_dataset designation="EFetch Results Chunk 0" ftype="xml" file="viruses.tax.xml" lines_diff="2">
+        </discovered_dataset>
       </output>
     </test>
   </tests>