Mercurial > repos > iuc > ncbi_eutils_efetch

comparison efetch.xml @ 5:e269b3b5185b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 15bcc5104c577b4b9c761f2854fc686c07ffa9db
author iuc
date Thu, 07 Jul 2016 02:37:49 -0400
parents c26d1863f3f3
children 2ff5369b4b51
comparison
equal deleted inserted replaced
4:c26d1863f3f3 5:e269b3b5185b
17 --retmode $retmode 17 --retmode $retmode
18 #end if 18 #end if
19 --rettype $rettype 19 --rettype $rettype
20 20
21 @EMAIL_ARGUMENTS@ 21 @EMAIL_ARGUMENTS@
22 $whole 22 ]]></command>
23 > $default]]></command>
24 <inputs> 23 <inputs>
25 <expand macro="db"/> 24 <expand macro="db"/>
26 <expand macro="list_or_hist"/> 25 <expand macro="list_or_hist"/>
27 <param checked="false" label="Download all records associated with query" name="whole" type="boolean" truevalue="--whole" falsevalue=""/>
28 </inputs> 26 </inputs>
29 <outputs> 27 <outputs>
30 <data format="txt" name="default" label="NCBI EFetch Results"> 28 <collection type="list" label="NCBI EFetch Results" name="output1">
31 <discover_datasets pattern="__designation__.out" ext="txt"/> 29 <discover_datasets pattern="__designation_and_ext__" directory="downloads"/>
32 <expand macro="efetch_formats" /> 30 </collection>
33 </data>
34 </outputs> 31 </outputs>
35 <tests> 32 <tests>
36 <test> 33 <test>
37 <param name="db_select" value="taxonomy"/> 34 <param name="db_select" value="taxonomy"/>
38 <param name="output_format" value="full-xml"/> 35 <param name="output_format" value="full-xml"/>
39 <param name="qss" value="id_list"/> 36 <param name="qss" value="id_list"/>
40 <param name="id_list" value="10239"/> 37 <param name="id_list" value="10239"/>
41 <output name="default" file="viruses.tax.xml"> 38 <output name="default">
39 <discovered_dataset designation="EFetch Results Chunk 0" ftype="xml" file="viruses.tax.xml" lines_diff="2">
40 </discovered_dataset>
42 </output> 41 </output>
43 </test> 42 </test>
44 </tests> 43 </tests>
45 <help><![CDATA[ 44 <help><![CDATA[
46 NCBI Entrez EFetch 45 NCBI Entrez EFetch