Mercurial > repos > iuc > ncbi_eutils_efetch

comparison efetch.xml @ 4:c26d1863f3f3 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
author iuc
date Fri, 10 Jun 2016 15:03:49 -0400
parents aa88712a7536
children e269b3b5185b
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3:aa88712a7536 4:c26d1863f3f3
9 <command detect_errors="aggressive" interpreter="python"><![CDATA[efetch.py 9 <command detect_errors="aggressive" interpreter="python"><![CDATA[efetch.py
10 $db.db_select 10 $db.db_select
11 11
12 @LIST_OR_HIST@ 12 @LIST_OR_HIST@
13 13
14 #set retmode, rettype = str($db.output_format).split('-') 14 #set rettype, retmode = str($db.output_format).split('-')
15 ## Otherwise, defaults to a None/empty which implies 'default' to NCBI 15 ## Otherwise, defaults to a None/empty which implies 'default' to NCBI
16 #if retmode != "null": 16 #if retmode != "null":
17 --retmode $retmode 17 --retmode $retmode
18 #end if 18 #end if
19 --rettype $rettype 19 --rettype $rettype
33 </data> 33 </data>
34 </outputs> 34 </outputs>
35 <tests> 35 <tests>
36 <test> 36 <test>
37 <param name="db_select" value="taxonomy"/> 37 <param name="db_select" value="taxonomy"/>
38 <param name="output_format" value="docsum-xml"/> 38 <param name="output_format" value="full-xml"/>
39 <param name="qss" value="id_list"/> 39 <param name="qss" value="id_list"/>
40 <param name="id_list" value="10239"/> 40 <param name="id_list" value="10239"/>
41 <output name="default" file="viruses.tax.xml"> 41 <output name="default" file="viruses.tax.xml">
42 </output> 42 </output>
43 </test> 43 </test>