Mercurial > repos > iuc > ncbi_datasets

diff datasets_genome.xml @ 12:e8d51503c749 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_datasets commit baddca770f8ae8475785374d883b3b42fac27c0c
author iuc
date Wed, 24 Aug 2022 13:00:22 +0000
parents 4ca46c586b54
children d979ba07ddd4
line wrap: on
line diff
--- a/datasets_genome.xml	Thu Jun 23 17:32:35 2022 +0000
+++ b/datasets_genome.xml	Wed Aug 24 13:00:22 2022 +0000
@@ -180,12 +180,12 @@
                 </assert_contents>
             </output>
             <output_collection name="genomic_gtf" type="list">
+                <element name="GCF_000007445.1" file="GCF_000007445.1.genomic.gtf" compare="contains"/>
                 <element name="GCF_000013305.1" file="genome.2.GCF_000013305.1.genomic.gtf" compare="contains"/>
-                <element name="GCF_000007445.1" file="GCF_000007445.1.genomic.gtf" compare="contains"/>
             </output_collection>
             <output_collection name="genomic_cds" type="list">
+                <element name="GCF_000007445.1" file="genome.2.GCF_000007445.1.genomic.cds" compare="contains"/>
                 <element name="GCF_000013305.1" file="genome.2.GCF_000013305.1.genomic.cds" compare="contains"/>
-                <element name="GCF_000007445.1" file="genome.2.GCF_000007445.1.genomic.cds" compare="contains"/>
             </output_collection>
         </test>
         <test expect_num_outputs="4">
@@ -209,12 +209,12 @@
                 </assert_contents>
             </output>
             <output_collection name="genomic_gff" type="list">
+                <element name="GCF_000007445.1" file="genome.3.GCF_000007445.1.genomic.gff" compare="contains"/>
                 <element name="GCF_000013305.1" file="genome.3.GCF_000013305.1.genomic.gff" compare="contains"/>
-                <element name="GCF_000007445.1" file="genome.3.GCF_000007445.1.genomic.gff" compare="contains"/>
             </output_collection>
             <output_collection name="genomic_gbff" type="list">
+                <element name="GCF_000007445.1" file="genome.3.GCF_000007445.1.genomic.gbff" compare="contains"/>
                 <element name="GCF_000013305.1" file="genome.3.GCF_000013305.1.genomic.gbff" compare="contains"/>
-                <element name="GCF_000007445.1" file="genome.3.GCF_000007445.1.genomic.gbff" compare="contains"/>
             </output_collection>
         </test>
         <test expect_num_outputs="2">
@@ -279,6 +279,13 @@
             <param name="exclude_gff3" value="true"/>
             <param name="uncompressed" value="true"/>
             <output_collection name="genome_fasta" type="list:list" count="2">
+                <element name="GCF_000002945.1">
+                    <element name="chrI">
+                        <assert_contents>
+                            <has_text text=">NC_003424.3"/>
+                        </assert_contents>
+                    </element>
+                </element>
                 <element name="GCF_000146045.2">
                     <element name="chrI">
                         <assert_contents>
@@ -286,13 +293,6 @@
                         </assert_contents>
                     </element>
                 </element>
-                <element name="GCF_000002945.1">
-                    <element name="chrI">
-                        <assert_contents>
-                            <has_text text=">NC_003424.3"/>
-                        </assert_contents>
-                    </element>
-                </element>
             </output_collection>
         </test>
     </tests>