Mercurial > repos > iuc > ncbi_datasets

comparison datasets_genome.xml @ 12:e8d51503c749 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_datasets commit baddca770f8ae8475785374d883b3b42fac27c0c
author iuc
date Wed, 24 Aug 2022 13:00:22 +0000
parents 4ca46c586b54
children d979ba07ddd4
comparison
equal deleted inserted replaced
11:4ca46c586b54 12:e8d51503c749
178 <assert_contents> 178 <assert_contents>
179 <has_text text="GCF_000013305.1"/> 179 <has_text text="GCF_000013305.1"/>
180 </assert_contents> 180 </assert_contents>
181 </output> 181 </output>
182 <output_collection name="genomic_gtf" type="list"> 182 <output_collection name="genomic_gtf" type="list">
183 <element name="GCF_000007445.1" file="GCF_000007445.1.genomic.gtf" compare="contains"/>
183 <element name="GCF_000013305.1" file="genome.2.GCF_000013305.1.genomic.gtf" compare="contains"/> 184 <element name="GCF_000013305.1" file="genome.2.GCF_000013305.1.genomic.gtf" compare="contains"/>
184 <element name="GCF_000007445.1" file="GCF_000007445.1.genomic.gtf" compare="contains"/>
185 </output_collection> 185 </output_collection>
186 <output_collection name="genomic_cds" type="list"> 186 <output_collection name="genomic_cds" type="list">
187 <element name="GCF_000007445.1" file="genome.2.GCF_000007445.1.genomic.cds" compare="contains"/>
187 <element name="GCF_000013305.1" file="genome.2.GCF_000013305.1.genomic.cds" compare="contains"/> 188 <element name="GCF_000013305.1" file="genome.2.GCF_000013305.1.genomic.cds" compare="contains"/>
188 <element name="GCF_000007445.1" file="genome.2.GCF_000007445.1.genomic.cds" compare="contains"/>
189 </output_collection> 189 </output_collection>
190 </test> 190 </test>
191 <test expect_num_outputs="4"> 191 <test expect_num_outputs="4">
192 <conditional name="query|subcommand"> 192 <conditional name="query|subcommand">
193 <param name="download_by" value="accession"></param> 193 <param name="download_by" value="accession"></param>
207 <assert_contents> 207 <assert_contents>
208 <has_text text="SAMN02604181"/> 208 <has_text text="SAMN02604181"/>
209 </assert_contents> 209 </assert_contents>
210 </output> 210 </output>
211 <output_collection name="genomic_gff" type="list"> 211 <output_collection name="genomic_gff" type="list">
212 <element name="GCF_000007445.1" file="genome.3.GCF_000007445.1.genomic.gff" compare="contains"/>
212 <element name="GCF_000013305.1" file="genome.3.GCF_000013305.1.genomic.gff" compare="contains"/> 213 <element name="GCF_000013305.1" file="genome.3.GCF_000013305.1.genomic.gff" compare="contains"/>
213 <element name="GCF_000007445.1" file="genome.3.GCF_000007445.1.genomic.gff" compare="contains"/>
214 </output_collection> 214 </output_collection>
215 <output_collection name="genomic_gbff" type="list"> 215 <output_collection name="genomic_gbff" type="list">
216 <element name="GCF_000007445.1" file="genome.3.GCF_000007445.1.genomic.gbff" compare="contains"/>
216 <element name="GCF_000013305.1" file="genome.3.GCF_000013305.1.genomic.gbff" compare="contains"/> 217 <element name="GCF_000013305.1" file="genome.3.GCF_000013305.1.genomic.gbff" compare="contains"/>
217 <element name="GCF_000007445.1" file="genome.3.GCF_000007445.1.genomic.gbff" compare="contains"/>
218 </output_collection> 218 </output_collection>
219 </test> 219 </test>
220 <test expect_num_outputs="2"> 220 <test expect_num_outputs="2">
221 <conditional name="query|subcommand"> 221 <conditional name="query|subcommand">
222 <param name="download_by" value="accession"></param> 222 <param name="download_by" value="accession"></param>
277 <param name="exclude_seq" value="false"/> 277 <param name="exclude_seq" value="false"/>
278 <param name="exclude_genomic_cds" value="true"/> 278 <param name="exclude_genomic_cds" value="true"/>
279 <param name="exclude_gff3" value="true"/> 279 <param name="exclude_gff3" value="true"/>
280 <param name="uncompressed" value="true"/> 280 <param name="uncompressed" value="true"/>
281 <output_collection name="genome_fasta" type="list:list" count="2"> 281 <output_collection name="genome_fasta" type="list:list" count="2">
282 <element name="GCF_000002945.1">
283 <element name="chrI">
284 <assert_contents>
285 <has_text text=">NC_003424.3"/>
286 </assert_contents>
287 </element>
288 </element>
282 <element name="GCF_000146045.2"> 289 <element name="GCF_000146045.2">
283 <element name="chrI"> 290 <element name="chrI">
284 <assert_contents> 291 <assert_contents>
285 <has_text text=">NC_001133.9"/> 292 <has_text text=">NC_001133.9"/>
286 </assert_contents>
287 </element>
288 </element>
289 <element name="GCF_000002945.1">
290 <element name="chrI">
291 <assert_contents>
292 <has_text text=">NC_003424.3"/>
293 </assert_contents> 293 </assert_contents>
294 </element> 294 </element>
295 </element> 295 </element>
296 </output_collection> 296 </output_collection>
297 </test> 297 </test>