Mercurial > repos > iuc > multigsea

diff multigsea.xml @ 1:c06f093f3758 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multigsea commit eb12f339f6f2e72792e6db36848222227d43d008
author iuc
date Fri, 28 Feb 2025 10:25:26 +0000
parents d1925dbabe98
children
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--- a/multigsea.xml	Wed Jun 07 19:48:35 2023 +0000
+++ b/multigsea.xml	Fri Feb 28 10:25:26 2025 +0000
@@ -101,15 +101,14 @@
             <option value="dmelanogaster">Drosophila melanogaster (Fruit fly)</option>
             <option value="celegans">Caenorabditis elegans (Roundworm)</option>
         </param>
-        <param name="databases" type="select" multiple="true" label="Pathway databases" help="Available pathway databases">
-            <option value="all" selected="true">All available databases</option>
-            <option value="kegg">KEGG</option>
-            <option value="reactome">REACTOME</option>
-	    <option value="wikipathways">WIKIPATHWAYS</option>
-	    <option value="pathbank">PATHBANK</option>
-	    <option value="smpdb">SMPDB (Human only)</option>
-	    <option value="panther">PANTHER (Human only)</option>
-	    <option value="pharmgkb">PHARMGKB (Human only)</option>
+        <param name="databases" type="select" multiple="true" optional="false" label="Pathway databases" help="Available pathway databases">
+            <option value="kegg" selected="true">KEGG</option>
+            <option value="reactome" selected="true">REACTOME</option>
+	        <option value="wikipathways" selected="true">WIKIPATHWAYS</option>
+	        <option value="pathbank" selected="true">PATHBANK</option>
+	        <option value="smpdb">SMPDB (Human only)</option>
+	        <option value="panther">PANTHER (Human only)</option>
+	        <option value="pharmgkb">PHARMGKB (Human only)</option>
         </param>
         <param name="combine_pvalues" type="select" label="Combine p-values method" help="It specifies the method to combine multiple p-values ">
             <option value="stouffer">Stouffer</option>
@@ -144,6 +143,8 @@
             <output name="output">
                 <assert_contents>
                     <has_size value="43574" delta="300"/>
+                    <has_n_lines n="327"/>
+                    <has_n_columns n="9"/>
                     <has_text text="Ubiquinone and other terpenoid-quinone biosynthesis"/>
                 </assert_contents>
             </output>
@@ -171,7 +172,8 @@
             </conditional>
             <output name="output">
                 <assert_contents>
-                    <has_size value="42541" delta="300"/>
+                    <has_n_lines n="327"/>
+                    <has_n_columns n="9"/>
                     <has_text text="Ubiquinone and other terpenoid-quinone biosynthesis"/>
                 </assert_contents>
             </output>