Mercurial > repos > iuc > multigsea

comparison multigsea.xml @ 1:c06f093f3758 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multigsea commit eb12f339f6f2e72792e6db36848222227d43d008
author iuc
date Fri, 28 Feb 2025 10:25:26 +0000
parents d1925dbabe98
children
comparison
equal deleted inserted replaced
0:d1925dbabe98 1:c06f093f3758
99 <option value="xlaevis">Xenopus laevis (Flog)</option> 99 <option value="xlaevis">Xenopus laevis (Flog)</option>
100 <option value="drerio">Danio rerio (Zebrafish)</option> 100 <option value="drerio">Danio rerio (Zebrafish)</option>
101 <option value="dmelanogaster">Drosophila melanogaster (Fruit fly)</option> 101 <option value="dmelanogaster">Drosophila melanogaster (Fruit fly)</option>
102 <option value="celegans">Caenorabditis elegans (Roundworm)</option> 102 <option value="celegans">Caenorabditis elegans (Roundworm)</option>
103 </param> 103 </param>
104 <param name="databases" type="select" multiple="true" label="Pathway databases" help="Available pathway databases"> 104 <param name="databases" type="select" multiple="true" optional="false" label="Pathway databases" help="Available pathway databases">
105 <option value="all" selected="true">All available databases</option> 105 <option value="kegg" selected="true">KEGG</option>
106 <option value="kegg">KEGG</option> 106 <option value="reactome" selected="true">REACTOME</option>
107 <option value="reactome">REACTOME</option> 107 <option value="wikipathways" selected="true">WIKIPATHWAYS</option>
108 <option value="wikipathways">WIKIPATHWAYS</option> 108 <option value="pathbank" selected="true">PATHBANK</option>
109 <option value="pathbank">PATHBANK</option> 109 <option value="smpdb">SMPDB (Human only)</option>
110 <option value="smpdb">SMPDB (Human only)</option> 110 <option value="panther">PANTHER (Human only)</option>
111 <option value="panther">PANTHER (Human only)</option> 111 <option value="pharmgkb">PHARMGKB (Human only)</option>
112 <option value="pharmgkb">PHARMGKB (Human only)</option>
113 </param> 112 </param>
114 <param name="combine_pvalues" type="select" label="Combine p-values method" help="It specifies the method to combine multiple p-values "> 113 <param name="combine_pvalues" type="select" label="Combine p-values method" help="It specifies the method to combine multiple p-values ">
115 <option value="stouffer">Stouffer</option> 114 <option value="stouffer">Stouffer</option>
116 <option value="fisher">Fisher</option> 115 <option value="fisher">Fisher</option>
117 <option value="edgington">Edgington</option> 116 <option value="edgington">Edgington</option>
142 <param name="transcriptome_ids" value="SYMBOL"/> 141 <param name="transcriptome_ids" value="SYMBOL"/>
143 </conditional> 142 </conditional>
144 <output name="output"> 143 <output name="output">
145 <assert_contents> 144 <assert_contents>
146 <has_size value="43574" delta="300"/> 145 <has_size value="43574" delta="300"/>
146 <has_n_lines n="327"/>
147 <has_n_columns n="9"/>
147 <has_text text="Ubiquinone and other terpenoid-quinone biosynthesis"/> 148 <has_text text="Ubiquinone and other terpenoid-quinone biosynthesis"/>
148 </assert_contents> 149 </assert_contents>
149 </output> 150 </output>
150 </test> 151 </test>
151 <!-- Test all inputs --> 152 <!-- Test all inputs -->
169 <param name="metabolomics" value="metabolome.tsv"/> 170 <param name="metabolomics" value="metabolome.tsv"/>
170 <param name="metabolome_ids" value="HMDB"/> 171 <param name="metabolome_ids" value="HMDB"/>
171 </conditional> 172 </conditional>
172 <output name="output"> 173 <output name="output">
173 <assert_contents> 174 <assert_contents>
174 <has_size value="42541" delta="300"/> 175 <has_n_lines n="327"/>
176 <has_n_columns n="9"/>
175 <has_text text="Ubiquinone and other terpenoid-quinone biosynthesis"/> 177 <has_text text="Ubiquinone and other terpenoid-quinone biosynthesis"/>
176 </assert_contents> 178 </assert_contents>
177 </output> 179 </output>
178 </test> 180 </test>
179 </tests> 181 </tests>