Mercurial > repos > iuc > multigps

diff multigps.xml @ 4:0bec3b2df784 draft

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Uploaded
author iuc
date Mon, 03 Apr 2017 14:07:14 -0400
parents d78ff3764fe5
children d7c4baf43c13
line wrap: on
line diff
--- a/multigps.xml	Mon Apr 03 13:38:23 2017 -0400
+++ b/multigps.xml	Mon Apr 03 14:07:14 2017 -0400
@@ -14,9 +14,10 @@
             #if str($single_or_multi_expt) == 'multi':
                 #for $i in $single_or_multi_expt_cond['input_items']:
                     #set label_cond = $i['label_cond']
-                    #set file_name = $label_cond.input
+                    #set experiment_file_name = $label_cond.input
                     #set label = $label_cond.label
                     #set file_format = $label_cond.input.ext
+                    #set control_file_name = $label_cond.control
                     #set condition_name = $label_cond.condition_name
                     #set replicate_name = 'None'
                     #set experiment_type = $label_cond.experiment_type
@@ -29,7 +30,7 @@
                             #set replicate_name = $rncond.replicate_name
                         #end if
                     #end if
-                    --input_item '$file_name' '$label' '$file_format' '$condition_name' '$replicate_name' '$experiment_type' '$fixed_read_count'
+                    --input_item '$experiment_file_name' '$control_file_name' '$label' '$file_format' '$condition_name' '$replicate_name' '$experiment_type' '$fixed_read_count'
                 #end for
             #else:
                 #set expt = $single_or_multi_expt_cond.expt