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comparison multigps.xml @ 4:0bec3b2df784 draft

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Uploaded
author iuc
date Mon, 03 Apr 2017 14:07:14 -0400
parents d78ff3764fe5
children d7c4baf43c13
comparison
equal deleted inserted replaced
3:d78ff3764fe5 4:0bec3b2df784
12 ## General options 12 ## General options
13 #set single_or_multi_expt = $single_or_multi_expt_cond.single_or_multi_expt 13 #set single_or_multi_expt = $single_or_multi_expt_cond.single_or_multi_expt
14 #if str($single_or_multi_expt) == 'multi': 14 #if str($single_or_multi_expt) == 'multi':
15 #for $i in $single_or_multi_expt_cond['input_items']: 15 #for $i in $single_or_multi_expt_cond['input_items']:
16 #set label_cond = $i['label_cond'] 16 #set label_cond = $i['label_cond']
17 #set file_name = $label_cond.input 17 #set experiment_file_name = $label_cond.input
18 #set label = $label_cond.label 18 #set label = $label_cond.label
19 #set file_format = $label_cond.input.ext 19 #set file_format = $label_cond.input.ext
20 #set control_file_name = $label_cond.control
20 #set condition_name = $label_cond.condition_name 21 #set condition_name = $label_cond.condition_name
21 #set replicate_name = 'None' 22 #set replicate_name = 'None'
22 #set experiment_type = $label_cond.experiment_type 23 #set experiment_type = $label_cond.experiment_type
23 #set fixed_read_count = $label_cond.fixedreadcount 24 #set fixed_read_count = $label_cond.fixedreadcount
24 #if str($label) == 'Signal': 25 #if str($label) == 'Signal':
27 #set rncond = $label_cond.replicate_name_cond 28 #set rncond = $label_cond.replicate_name_cond
28 #if str($rncond.specify_replicate_name) == 'yes': 29 #if str($rncond.specify_replicate_name) == 'yes':
29 #set replicate_name = $rncond.replicate_name 30 #set replicate_name = $rncond.replicate_name
30 #end if 31 #end if
31 #end if 32 #end if
32 --input_item '$file_name' '$label' '$file_format' '$condition_name' '$replicate_name' '$experiment_type' '$fixed_read_count' 33 --input_item '$experiment_file_name' '$control_file_name' '$label' '$file_format' '$condition_name' '$replicate_name' '$experiment_type' '$fixed_read_count'
33 #end for 34 #end for
34 #else: 35 #else:
35 #set expt = $single_or_multi_expt_cond.expt 36 #set expt = $single_or_multi_expt_cond.expt
36 #set control = $single_or_multi_expt_cond.control 37 #set control = $single_or_multi_expt_cond.control
37 --expt '$expt' 38 --expt '$expt'