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comparison multigps.xml @ 10:bfe2da7083b7 draft

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Uploaded
author iuc
date Tue, 04 Apr 2017 15:23:30 -0400
parents 2e5d3c304171
children 5c2d5c0291ed
comparison
equal deleted inserted replaced
9:2e5d3c304171 10:bfe2da7083b7
155 <configfiles> 155 <configfiles>
156 <inputs name="inputs"/> 156 <inputs name="inputs"/>
157 <configfile name="design_file"> 157 <configfile name="design_file">
158 <![CDATA[ 158 <![CDATA[
159 #for cond_i, condition_items in enumerate($condition_repeat): 159 #for cond_i, condition_items in enumerate($condition_repeat):
160 #for signal_items in condition_items['signal_repeat']: 160 #for signal_items in $condition_items['signal_repeat']:
161 #set signal = $signal_items['signal'] 161 #set signal = $signal_items['signal']
162 #set replicate_name = $signal_items['replicate_name'] 162 #set replicate_name = $signal_items['replicate_name']
163 #set experiment_type = $signal['experiment_type'] 163 #set experiment_type = $signal['experiment_type']
164 #set line = str($signal) + '\t' + 'Signal' + '\t' + str($signal.ext.upper()) + '\t' + str($cond_i) + '\t' + str($replicate_name) + '\t' + str($experiment_type) 164 #set line = str($signal) + '\t' + 'Signal' + '\t' + str($signal.ext.upper()) + '\t' + str($cond_i) + '\t' + str($replicate_name) + '\t' + str($experiment_type)
165 #set fixedreadcount_cond = $signal_items['fixedreadcount_cond'] 165 #set fixedreadcount_cond = $signal_items['fixedreadcount_cond']
166 #set fixedreadcount_select = $fixedreadcount_cond['fixedreadcount_select'] 166 #set fixedreadcount_select = $fixedreadcount_cond['fixedreadcount_select']
167 #if str($fixedreadcount_select) == 'yes': 167 #if str($fixedreadcount_select) == 'yes':
168 #set $line += + '\t' + str($fixedreadcount_cond['fixedreadcount']) 168 #set line = $line + '\t' + str($fixedreadcount_cond['fixedreadcount'])
169 #end if 169 #end if
170 '%s\n' % $line 170 '%s\n' % $line
171 #end for 171 #end for
172 #for control_items in condition_items['control_repeat']: 172 #for control_items in condition_items['control_repeat']:
173 #set control = $control_items['control'] 173 #set control = $control_items['control']
174 #set experiment_type = $control_items['experiment_type'] 174 #set experiment_type = $control_items['experiment_type']
175 #set line = str($control_items) + '\t' + 'Control' + '\t' + str($control.ext.upper()) + '\t' + str($cond_i) 175 #set line = str($control_items) + '\t' + 'Control' + '\t' + str($control.ext.upper()) + '\t' + str($cond_i)
176 #set specify_replicate_name_cond = $control_items['specify_replicate_name_cond'] 176 #set specify_replicate_name_cond = $control_items['specify_replicate_name_cond']
177 #set specify_replicate_name = $specify_replicate_name_cond.specify_replicate_name 177 #set specify_replicate_name = $specify_replicate_name_cond.specify_replicate_name
178 #if str($specify_replicate_name) == 'yes': 178 #if str($specify_replicate_name) == 'yes':
179 #set $line += '\t' + str($specify_replicate_name_cond['replicate_name']) 179 #set line = $line + '\t' + str($specify_replicate_name_cond['replicate_name'])
180 #end if 180 #end if
181 #set $line += '\t' + str($experiment_type) 181 #set line = $line + '\t' + str($experiment_type)
182 #set fixedreadcount_cond = $control_items['fixedreadcount_cond'] 182 #set fixedreadcount_cond = $control_items['fixedreadcount_cond']
183 #set fixedreadcount_select = $fixedreadcount_cond['fixedreadcount_select'] 183 #set fixedreadcount_select = $fixedreadcount_cond['fixedreadcount_select']
184 #if str($fixedreadcount_select) == 'yes': 184 #if str($fixedreadcount_select) == 'yes':
185 #set $line += '\t' + str($fixedreadcount_cond['fixedreadcount']) 185 #set line = $line + '\t' + str($fixedreadcount_cond['fixedreadcount'])
186 #end if 186 #end if
187 '%s\n' % $line 187 '%s\n' % $line
188 #end for 188 #end for
189 #end for 189 #end for
190 ]]> 190 ]]>