Mercurial > repos > iuc > mothur_summary_shared

diff summary.shared.xml @ 5:d98918707cbc draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 13:57:13 -0400
parents 2b8970aa8c5c
children
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line diff
--- a/summary.shared.xml	Wed Feb 14 10:51:37 2018 -0500
+++ b/summary.shared.xml	Tue Mar 20 13:57:13 2018 -0400
@@ -84,6 +84,7 @@
             <option value="lt" selected="true">Phylip formatted Lower Triangle Matrix</option>
             <option value="square">Phylip formatted Square Matrix</option>
         </param>
+        <expand macro="param-savelog"/>
     </inputs>
     <outputs>
         <expand macro="logfile-output"/>
@@ -103,6 +104,7 @@
         <test><!-- test with defaults -->
             <param name="otu" value="amazon.an.shared"/>
             <output name="summary" md5="29384359e341721b3519fba35b9301e4" ftype="tabular"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test with subsample -->
@@ -116,6 +118,7 @@
                     <has_text text="pasture"/>
                 </assert_contents>
             </output>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test with label and groups select and all calculators -->
@@ -124,6 +127,7 @@
             <param name="groups" value="forest,pasture"/>
             <param name="calc" value="sharedsobs,sharedchao,sharedace,anderberg,jclass,jest,kulczynski,kulczynskicody,kstest,lennon,ochiai,sorclass,sorest,whittaker,hamming,memchi2,memchord,memeuclidean,mempearson,braycurtis,jabund,morisitahorn,sorabund,thetan,thetayc,canberra,gower,hellinger,manhattan,odum,soergel,spearman,speciesprofile,structchi2,structchord,structeuclidean,structkulczynski,structpearson,sharednseqs,sharedobserved"/>
             <output name="summary" md5="acd56d4ab09ec1c2117f5e4840a875a1" ftype="tabular"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test with distance output collection -->
@@ -144,6 +148,7 @@
                     </assert_contents>
                 </element>
             </output_collection>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
     </tests>