Mercurial > repos > iuc > mothur_summary_shared

comparison summary.shared.xml @ 5:d98918707cbc draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 13:57:13 -0400
parents 2b8970aa8c5c
children
comparison
equal deleted inserted replaced
4:548d7023cef0 5:d98918707cbc
82 </conditional> 82 </conditional>
83 <param name="output" type="select" label="output - Distance Matrix Output Format" help=""> 83 <param name="output" type="select" label="output - Distance Matrix Output Format" help="">
84 <option value="lt" selected="true">Phylip formatted Lower Triangle Matrix</option> 84 <option value="lt" selected="true">Phylip formatted Lower Triangle Matrix</option>
85 <option value="square">Phylip formatted Square Matrix</option> 85 <option value="square">Phylip formatted Square Matrix</option>
86 </param> 86 </param>
87 <expand macro="param-savelog"/>
87 </inputs> 88 </inputs>
88 <outputs> 89 <outputs>
89 <expand macro="logfile-output"/> 90 <expand macro="logfile-output"/>
90 <data name="summary" format="tabular" from_work_dir="otu*.summary" label="${tool.name} on ${on_string}: shared.summary"/> 91 <data name="summary" format="tabular" from_work_dir="otu*.summary" label="${tool.name} on ${on_string}: shared.summary"/>
91 <collection name="distfiles" type="list" label="${tool.name} on ${on_string}: dist"> 92 <collection name="distfiles" type="list" label="${tool.name} on ${on_string}: dist">
101 </outputs> 102 </outputs>
102 <tests> 103 <tests>
103 <test><!-- test with defaults --> 104 <test><!-- test with defaults -->
104 <param name="otu" value="amazon.an.shared"/> 105 <param name="otu" value="amazon.an.shared"/>
105 <output name="summary" md5="29384359e341721b3519fba35b9301e4" ftype="tabular"/> 106 <output name="summary" md5="29384359e341721b3519fba35b9301e4" ftype="tabular"/>
107 <param name="savelog" value="true"/>
106 <expand macro="logfile-test"/> 108 <expand macro="logfile-test"/>
107 </test> 109 </test>
108 <test><!-- test with subsample --> 110 <test><!-- test with subsample -->
109 <param name="otu" value="amazon.mothur.shared"/> 111 <param name="otu" value="amazon.mothur.shared"/>
110 <param name="use" value="yes"/> 112 <param name="use" value="yes"/>
114 <assert_contents> 116 <assert_contents>
115 <has_text text="forest"/> 117 <has_text text="forest"/>
116 <has_text text="pasture"/> 118 <has_text text="pasture"/>
117 </assert_contents> 119 </assert_contents>
118 </output> 120 </output>
121 <param name="savelog" value="true"/>
119 <expand macro="logfile-test"/> 122 <expand macro="logfile-test"/>
120 </test> 123 </test>
121 <test><!-- test with label and groups select and all calculators --> 124 <test><!-- test with label and groups select and all calculators -->
122 <param name="otu" value="amazon.an.shared"/> 125 <param name="otu" value="amazon.an.shared"/>
123 <param name="label" value="0.05,0.22,0.32"/> 126 <param name="label" value="0.05,0.22,0.32"/>
124 <param name="groups" value="forest,pasture"/> 127 <param name="groups" value="forest,pasture"/>
125 <param name="calc" value="sharedsobs,sharedchao,sharedace,anderberg,jclass,jest,kulczynski,kulczynskicody,kstest,lennon,ochiai,sorclass,sorest,whittaker,hamming,memchi2,memchord,memeuclidean,mempearson,braycurtis,jabund,morisitahorn,sorabund,thetan,thetayc,canberra,gower,hellinger,manhattan,odum,soergel,spearman,speciesprofile,structchi2,structchord,structeuclidean,structkulczynski,structpearson,sharednseqs,sharedobserved"/> 128 <param name="calc" value="sharedsobs,sharedchao,sharedace,anderberg,jclass,jest,kulczynski,kulczynskicody,kstest,lennon,ochiai,sorclass,sorest,whittaker,hamming,memchi2,memchord,memeuclidean,mempearson,braycurtis,jabund,morisitahorn,sorabund,thetan,thetayc,canberra,gower,hellinger,manhattan,odum,soergel,spearman,speciesprofile,structchi2,structchord,structeuclidean,structkulczynski,structpearson,sharednseqs,sharedobserved"/>
126 <output name="summary" md5="acd56d4ab09ec1c2117f5e4840a875a1" ftype="tabular"/> 129 <output name="summary" md5="acd56d4ab09ec1c2117f5e4840a875a1" ftype="tabular"/>
130 <param name="savelog" value="true"/>
127 <expand macro="logfile-test"/> 131 <expand macro="logfile-test"/>
128 </test> 132 </test>
129 <test><!-- test with distance output collection --> 133 <test><!-- test with distance output collection -->
130 <param name="otu" value="amazon.an.shared"/> 134 <param name="otu" value="amazon.an.shared"/>
131 <param name="distance" value="true"/> 135 <param name="distance" value="true"/>
142 <has_text text="forest"/> 146 <has_text text="forest"/>
143 <has_text text="pasture"/> 147 <has_text text="pasture"/>
144 </assert_contents> 148 </assert_contents>
145 </element> 149 </element>
146 </output_collection> 150 </output_collection>
151 <param name="savelog" value="true"/>
147 <expand macro="logfile-test"/> 152 <expand macro="logfile-test"/>
148 </test> 153 </test>
149 </tests> 154 </tests>
150 <help><![CDATA[ 155 <help><![CDATA[
151 156