diff summary.seqs.xml @ 4:6082f78ea7cb draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 13:37:54 -0400
parents b7c0b62e024a
children
line wrap: on
line diff
--- a/summary.seqs.xml	Wed Feb 14 10:04:27 2018 -0500
+++ b/summary.seqs.xml	Tue Mar 20 13:37:54 2018 -0400
@@ -32,6 +32,7 @@
         <param name="fasta" type="data" format="fasta,mothur.align" label="fasta - Dataset"/>
         <param name="name" type="data" format="mothur.names" label="name - Names" optional="true"/>
         <param name="count" type="data" format="mothur.count_table" optional="true" label="count - a count_table" help="The count file is similar to the name file in that it is used to represent the number of duplicate sequences for a given representative sequence. "/>
+        <expand macro="param-savelog"/>
     </inputs>
     <outputs>
         <expand macro="logfile-output"/>
@@ -41,18 +42,21 @@
         <test>
             <param name="fasta" value="Mock_S280_L001_R1_001_small.trim.contigs.fasta"/>
             <output name="out_summary" file="Mock_S280_L001_R1_001_small.trim.contigs.summary" ftype="mothur.summary"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test names input -->
             <param name="fasta" value="amazon.unique.fasta"/>
             <param name="name" value="amazon.names"/>
             <output name="out_summary" md5="b8a53926f64434291d232d2736da8293" ftype="mothur.summary"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test count input -->
             <param name="fasta" value="amazon.unique.fasta"/>
             <param name="count" value="amazon.count_table"/>
             <output name="out_summary" md5="b8a53926f64434291d232d2736da8293" ftype="mothur.summary"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
     </tests>