Mercurial > repos > iuc > mothur_summary_seqs

comparison summary.seqs.xml @ 4:6082f78ea7cb draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 13:37:54 -0400
parents b7c0b62e024a
children
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3:b7c0b62e024a 4:6082f78ea7cb
30 ]]></command> 30 ]]></command>
31 <inputs> 31 <inputs>
32 <param name="fasta" type="data" format="fasta,mothur.align" label="fasta - Dataset"/> 32 <param name="fasta" type="data" format="fasta,mothur.align" label="fasta - Dataset"/>
33 <param name="name" type="data" format="mothur.names" label="name - Names" optional="true"/> 33 <param name="name" type="data" format="mothur.names" label="name - Names" optional="true"/>
34 <param name="count" type="data" format="mothur.count_table" optional="true" label="count - a count_table" help="The count file is similar to the name file in that it is used to represent the number of duplicate sequences for a given representative sequence. "/> 34 <param name="count" type="data" format="mothur.count_table" optional="true" label="count - a count_table" help="The count file is similar to the name file in that it is used to represent the number of duplicate sequences for a given representative sequence. "/>
35 <expand macro="param-savelog"/>
35 </inputs> 36 </inputs>
36 <outputs> 37 <outputs>
37 <expand macro="logfile-output"/> 38 <expand macro="logfile-output"/>
38 <data name="out_summary" format="mothur.summary" from_work_dir="fasta*.summary" label="${tool.name} on ${on_string}: summary"/> 39 <data name="out_summary" format="mothur.summary" from_work_dir="fasta*.summary" label="${tool.name} on ${on_string}: summary"/>
39 </outputs> 40 </outputs>
40 <tests> 41 <tests>
41 <test> 42 <test>
42 <param name="fasta" value="Mock_S280_L001_R1_001_small.trim.contigs.fasta"/> 43 <param name="fasta" value="Mock_S280_L001_R1_001_small.trim.contigs.fasta"/>
43 <output name="out_summary" file="Mock_S280_L001_R1_001_small.trim.contigs.summary" ftype="mothur.summary"/> 44 <output name="out_summary" file="Mock_S280_L001_R1_001_small.trim.contigs.summary" ftype="mothur.summary"/>
45 <param name="savelog" value="true"/>
44 <expand macro="logfile-test"/> 46 <expand macro="logfile-test"/>
45 </test> 47 </test>
46 <test><!-- test names input --> 48 <test><!-- test names input -->
47 <param name="fasta" value="amazon.unique.fasta"/> 49 <param name="fasta" value="amazon.unique.fasta"/>
48 <param name="name" value="amazon.names"/> 50 <param name="name" value="amazon.names"/>
49 <output name="out_summary" md5="b8a53926f64434291d232d2736da8293" ftype="mothur.summary"/> 51 <output name="out_summary" md5="b8a53926f64434291d232d2736da8293" ftype="mothur.summary"/>
52 <param name="savelog" value="true"/>
50 <expand macro="logfile-test"/> 53 <expand macro="logfile-test"/>
51 </test> 54 </test>
52 <test><!-- test count input --> 55 <test><!-- test count input -->
53 <param name="fasta" value="amazon.unique.fasta"/> 56 <param name="fasta" value="amazon.unique.fasta"/>
54 <param name="count" value="amazon.count_table"/> 57 <param name="count" value="amazon.count_table"/>
55 <output name="out_summary" md5="b8a53926f64434291d232d2736da8293" ftype="mothur.summary"/> 58 <output name="out_summary" md5="b8a53926f64434291d232d2736da8293" ftype="mothur.summary"/>
59 <param name="savelog" value="true"/>
56 <expand macro="logfile-test"/> 60 <expand macro="logfile-test"/>
57 </test> 61 </test>
58 </tests> 62 </tests>
59 <help><![CDATA[ 63 <help><![CDATA[
60 64