Mercurial > repos > iuc > mothur_seq_error

comparison seq.error.xml @ 4:165cd9cb3aff draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 13:47:08 -0400
parents 5aa51a579879
children 866820087837
comparison
equal deleted inserted replaced
3:5aa51a579879 4:165cd9cb3aff
76 <when value="no"/> 76 <when value="no"/>
77 </conditional> 77 </conditional>
78 <param name="count" type="data" format="mothur.count_table" optional="true" label="count table"/> 78 <param name="count" type="data" format="mothur.count_table" optional="true" label="count table"/>
79 <param name="threshold" type="float" value="" min="0" max="1" optional="true" label="threshold - error rate at which to report (default 1.)"/> 79 <param name="threshold" type="float" value="" min="0" max="1" optional="true" label="threshold - error rate at which to report (default 1.)"/>
80 <param name="ignorechimeras" type="boolean" truevalue="true" falsevalue="false" checked="true" label="ignorechimeras - "/> 80 <param name="ignorechimeras" type="boolean" truevalue="true" falsevalue="false" checked="true" label="ignorechimeras - "/>
81 <expand macro="param-savelog"/>
81 </inputs> 82 </inputs>
82 <outputs> 83 <outputs>
83 <expand macro="logfile-output"/> 84 <expand macro="logfile-output"/>
84 <data name="summary_out" format="tabular" from_work_dir="fasta_in*.error.summary" label="${tool.name} on ${on_string}: error.summary"> 85 <data name="summary_out" format="tabular" from_work_dir="fasta_in*.error.summary" label="${tool.name} on ${on_string}: error.summary">
85 <filter>'summary' in output_sel</filter> 86 <filter>'summary' in output_sel</filter>
127 <output name="ref_query_out" md5="42b42eb4c6bc2705ded2c697a757106f"/> 128 <output name="ref_query_out" md5="42b42eb4c6bc2705ded2c697a757106f"/>
128 <output name="seq_out" md5="5a884846a8d94b8482c2935d2e7e43e6"/> 129 <output name="seq_out" md5="5a884846a8d94b8482c2935d2e7e43e6"/>
129 <output name="seq_forward_out" md5="92a24ef3155bc050ae4fd31bab43cf92"/> 130 <output name="seq_forward_out" md5="92a24ef3155bc050ae4fd31bab43cf92"/>
130 <output name="seq_reverse_out" md5="92a24ef3155bc050ae4fd31bab43cf92"/> 131 <output name="seq_reverse_out" md5="92a24ef3155bc050ae4fd31bab43cf92"/>
131 <output name="summary_out" md5="04abbbd6aa82f084e4a3bd51c4ce98e6"/> 132 <output name="summary_out" md5="04abbbd6aa82f084e4a3bd51c4ce98e6"/>
133 <param name="savelog" value="true"/>
132 <expand macro="logfile-test"/> 134 <expand macro="logfile-test"/>
133 </test> 135 </test>
134 <test><!--test with qual file and all outputs --> 136 <test><!--test with qual file and all outputs -->
135 <param name="fasta_in" value="Mock_S280_L001_R1_001_small.trim.contigs.good.align_head" ftype="mothur.align"/> 137 <param name="fasta_in" value="Mock_S280_L001_R1_001_small.trim.contigs.good.align_head" ftype="mothur.align"/>
136 <param name="template" value="HMP_MOCK.v35.align" ftype="mothur.align"/> 138 <param name="template" value="HMP_MOCK.v35.align" ftype="mothur.align"/>
148 <output name="qual_reverse_out" md5="81f17617ba99cac5807e454a626eb006"/> 150 <output name="qual_reverse_out" md5="81f17617ba99cac5807e454a626eb006"/>
149 <output name="seq_out" md5="69a8ec131df0b1d4d95eaeb04e057941"/> 151 <output name="seq_out" md5="69a8ec131df0b1d4d95eaeb04e057941"/>
150 <output name="seq_forward_out" md5="dbcbbefdc83c2a7c045e3930850cdbd9"/> 152 <output name="seq_forward_out" md5="dbcbbefdc83c2a7c045e3930850cdbd9"/>
151 <output name="seq_reverse_out" md5="5618b1e431306ec1275f1572d6c0c2fc"/> 153 <output name="seq_reverse_out" md5="5618b1e431306ec1275f1572d6c0c2fc"/>
152 <output name="summary_out" md5="d33bddf9b112f2f3a80b38cf7ac50e6a"/> 154 <output name="summary_out" md5="d33bddf9b112f2f3a80b38cf7ac50e6a"/>
155 <param name="savelog" value="true"/>
153 <expand macro="logfile-test"/> 156 <expand macro="logfile-test"/>
154 </test> 157 </test>
155 </tests> 158 </tests>
156 <help><![CDATA[ 159 <help><![CDATA[
157 160