Mercurial > repos > iuc > mothur_make_shared

diff make.shared.xml @ 6:0b282bb8843b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 13:34:49 -0400
parents 5faa13c51864
children
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line diff
--- a/make.shared.xml	Wed Feb 14 11:39:59 2018 -0500
+++ b/make.shared.xml	Tue Mar 20 13:34:49 2018 -0400
@@ -67,6 +67,7 @@
                 <param name="otu" type="data" format="biom1" label="Biom 1.0 file"/>
             </when>
         </conditional>
+        <expand macro="param-savelog"/>
     </inputs>
     <outputs>
         <expand macro="logfile-output"/>
@@ -84,6 +85,7 @@
             <param name="infile" value="biom"/>
             <param name="otu" value="example.biom"/>
             <output name="shared" md5="e44d5ca4e4a5dbc68e8219c5690aa156" ftype="mothur.shared"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test with otu and group file-->
@@ -91,6 +93,7 @@
             <param name="otu" value="amazon.an.list" ftype="mothur.list"/>
             <param name="group" value="amazon.groups" ftype="mothur.groups"/>
             <output name="shared" file="amazon.an.shared" ftype="mothur.shared"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test with label and group select-->
@@ -103,6 +106,7 @@
             <output_collection name="labelshares" count="3">
                 <element name="0.22" md5="592b4fb84412de47be18e64ef26b7a80" ftype="mothur.shared"/>
             </output_collection>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
     </tests>