Mercurial > repos > iuc > mothur_make_shared

comparison make.shared.xml @ 6:0b282bb8843b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 13:34:49 -0400
parents 5faa13c51864
children
comparison
equal deleted inserted replaced
5:53f4fe048b5c 6:0b282bb8843b
65 </when> 65 </when>
66 <when value="biom"> 66 <when value="biom">
67 <param name="otu" type="data" format="biom1" label="Biom 1.0 file"/> 67 <param name="otu" type="data" format="biom1" label="Biom 1.0 file"/>
68 </when> 68 </when>
69 </conditional> 69 </conditional>
70 <expand macro="param-savelog"/>
70 </inputs> 71 </inputs>
71 <outputs> 72 <outputs>
72 <expand macro="logfile-output"/> 73 <expand macro="logfile-output"/>
73 <data name="shared" format="mothur.shared" from_work_dir="intype_otu*.shared" label="${tool.name} on ${on_string}: shared"/> 74 <data name="shared" format="mothur.shared" from_work_dir="intype_otu*.shared" label="${tool.name} on ${on_string}: shared"/>
74 <data name="groupout" format="mothur.groups" from_work_dir="intype_otu*.groups" label="${tool.name} on ${on_string}: groups"> 75 <data name="groupout" format="mothur.groups" from_work_dir="intype_otu*.groups" label="${tool.name} on ${on_string}: groups">
82 <tests> 83 <tests>
83 <test><!-- test with biom file --> 84 <test><!-- test with biom file -->
84 <param name="infile" value="biom"/> 85 <param name="infile" value="biom"/>
85 <param name="otu" value="example.biom"/> 86 <param name="otu" value="example.biom"/>
86 <output name="shared" md5="e44d5ca4e4a5dbc68e8219c5690aa156" ftype="mothur.shared"/> 87 <output name="shared" md5="e44d5ca4e4a5dbc68e8219c5690aa156" ftype="mothur.shared"/>
88 <param name="savelog" value="true"/>
87 <expand macro="logfile-test"/> 89 <expand macro="logfile-test"/>
88 </test> 90 </test>
89 <test><!-- test with otu and group file--> 91 <test><!-- test with otu and group file-->
90 <param name="infile" value="otulist"/> 92 <param name="infile" value="otulist"/>
91 <param name="otu" value="amazon.an.list" ftype="mothur.list"/> 93 <param name="otu" value="amazon.an.list" ftype="mothur.list"/>
92 <param name="group" value="amazon.groups" ftype="mothur.groups"/> 94 <param name="group" value="amazon.groups" ftype="mothur.groups"/>
93 <output name="shared" file="amazon.an.shared" ftype="mothur.shared"/> 95 <output name="shared" file="amazon.an.shared" ftype="mothur.shared"/>
96 <param name="savelog" value="true"/>
94 <expand macro="logfile-test"/> 97 <expand macro="logfile-test"/>
95 </test> 98 </test>
96 <test><!-- test with label and group select--> 99 <test><!-- test with label and group select-->
97 <param name="infile" value="otulist"/> 100 <param name="infile" value="otulist"/>
98 <param name="otu" value="amazon.an.list" ftype="mothur.list"/> 101 <param name="otu" value="amazon.an.list" ftype="mothur.list"/>
101 <param name="groups" value="forest,pasture"/> 104 <param name="groups" value="forest,pasture"/>
102 <output name="groupout" md5="fb60628ae445e7b06f9833f632b2cd0c" ftype="mothur.groups"/> 105 <output name="groupout" md5="fb60628ae445e7b06f9833f632b2cd0c" ftype="mothur.groups"/>
103 <output_collection name="labelshares" count="3"> 106 <output_collection name="labelshares" count="3">
104 <element name="0.22" md5="592b4fb84412de47be18e64ef26b7a80" ftype="mothur.shared"/> 107 <element name="0.22" md5="592b4fb84412de47be18e64ef26b7a80" ftype="mothur.shared"/>
105 </output_collection> 108 </output_collection>
109 <param name="savelog" value="true"/>
106 <expand macro="logfile-test"/> 110 <expand macro="logfile-test"/>
107 </test> 111 </test>
108 </tests> 112 </tests>
109 <help><![CDATA[ 113 <help><![CDATA[
110 114