Mercurial > repos > iuc > mothur_make_lefse
comparison make.lefse.xml @ 5:4dfe3740f6d6 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
| author | iuc |
|---|---|
| date | Tue, 20 Mar 2018 13:30:17 -0400 |
| parents | e9cd4b205ddd |
| children | 72367f588f5b |
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| 4:96245210f2a9 | 5:4dfe3740f6d6 |
|---|---|
| 46 <option value="totalgroup" selected="true">totalgroup</option> | 46 <option value="totalgroup" selected="true">totalgroup</option> |
| 47 <option value="totalotu">totalotu</option> | 47 <option value="totalotu">totalotu</option> |
| 48 <option value="averagegroup">averagegroup</option> | 48 <option value="averagegroup">averagegroup</option> |
| 49 <option value="averageotu">averageotu</option> | 49 <option value="averageotu">averageotu</option> |
| 50 </param> | 50 </param> |
| 51 <expand macro="param-savelog"/> | |
| 51 </inputs> | 52 </inputs> |
| 52 <outputs> | 53 <outputs> |
| 53 <expand macro="logfile-output"/> | 54 <expand macro="logfile-output"/> |
| 54 <data name="lefse_out" format="tabular" from_work_dir="otu*.lefse" label="${tool.name} on ${on_string}: lefse"/> | 55 <data name="lefse_out" format="tabular" from_work_dir="otu*.lefse" label="${tool.name} on ${on_string}: lefse"/> |
| 55 </outputs> | 56 </outputs> |
| 56 <tests> | 57 <tests> |
| 57 <test><!-- test with shared file and defaults --> | 58 <test><!-- test with shared file and defaults --> |
| 58 <param name="otu" value="amazon.an.shared" ftype="mothur.shared"/> | 59 <param name="otu" value="amazon.an.shared" ftype="mothur.shared"/> |
| 59 <output name="lefse_out" md5="295633107cd983be73389e8b92164686" ftype="tabular"/> | 60 <output name="lefse_out" md5="295633107cd983be73389e8b92164686" ftype="tabular"/> |
| 61 <param name="savelog" value="true"/> | |
| 60 <expand macro="logfile-test"/> | 62 <expand macro="logfile-test"/> |
| 61 </test> | 63 </test> |
| 62 <test><!-- test with relabund file --> | 64 <test><!-- test with relabund file --> |
| 63 <param name="otu" value="amazon.an.relabund" ftype="mothur.relabund"/> | 65 <param name="otu" value="amazon.an.relabund" ftype="mothur.relabund"/> |
| 64 <param name="design" value="toymothur.design2" ftype="tabular"/> | 66 <param name="design" value="toymothur.design2" ftype="tabular"/> |
| 65 <param name="label" value="0.18"/> | 67 <param name="label" value="0.18"/> |
| 66 <output name="lefse_out" md5="c1e88702c6db198080c09f3b9c404c63" ftype="tabular"/> | 68 <output name="lefse_out" md5="c1e88702c6db198080c09f3b9c404c63" ftype="tabular"/> |
| 69 <param name="savelog" value="true"/> | |
| 67 <expand macro="logfile-test"/> | 70 <expand macro="logfile-test"/> |
| 68 </test> | 71 </test> |
| 69 </tests> | 72 </tests> |
| 70 <help><