Mercurial > repos > iuc > mothur_make_lefse

comparison make.lefse.xml @ 5:4dfe3740f6d6 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 13:30:17 -0400
parents e9cd4b205ddd
children 72367f588f5b
comparison
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4:96245210f2a9 5:4dfe3740f6d6
46 <option value="totalgroup" selected="true">totalgroup</option> 46 <option value="totalgroup" selected="true">totalgroup</option>
47 <option value="totalotu">totalotu</option> 47 <option value="totalotu">totalotu</option>
48 <option value="averagegroup">averagegroup</option> 48 <option value="averagegroup">averagegroup</option>
49 <option value="averageotu">averageotu</option> 49 <option value="averageotu">averageotu</option>
50 </param> 50 </param>
51 <expand macro="param-savelog"/>
51 </inputs> 52 </inputs>
52 <outputs> 53 <outputs>
53 <expand macro="logfile-output"/> 54 <expand macro="logfile-output"/>
54 <data name="lefse_out" format="tabular" from_work_dir="otu*.lefse" label="${tool.name} on ${on_string}: lefse"/> 55 <data name="lefse_out" format="tabular" from_work_dir="otu*.lefse" label="${tool.name} on ${on_string}: lefse"/>
55 </outputs> 56 </outputs>
56 <tests> 57 <tests>
57 <test><!-- test with shared file and defaults --> 58 <test><!-- test with shared file and defaults -->
58 <param name="otu" value="amazon.an.shared" ftype="mothur.shared"/> 59 <param name="otu" value="amazon.an.shared" ftype="mothur.shared"/>
59 <output name="lefse_out" md5="295633107cd983be73389e8b92164686" ftype="tabular"/> 60 <output name="lefse_out" md5="295633107cd983be73389e8b92164686" ftype="tabular"/>
61 <param name="savelog" value="true"/>
60 <expand macro="logfile-test"/> 62 <expand macro="logfile-test"/>
61 </test> 63 </test>
62 <test><!-- test with relabund file --> 64 <test><!-- test with relabund file -->
63 <param name="otu" value="amazon.an.relabund" ftype="mothur.relabund"/> 65 <param name="otu" value="amazon.an.relabund" ftype="mothur.relabund"/>
64 <param name="design" value="toymothur.design2" ftype="tabular"/> 66 <param name="design" value="toymothur.design2" ftype="tabular"/>
65 <param name="label" value="0.18"/> 67 <param name="label" value="0.18"/>
66 <output name="lefse_out" md5="c1e88702c6db198080c09f3b9c404c63" ftype="tabular"/> 68 <output name="lefse_out" md5="c1e88702c6db198080c09f3b9c404c63" ftype="tabular"/>
69 <param name="savelog" value="true"/>
67 <expand macro="logfile-test"/> 70 <expand macro="logfile-test"/>
68 </test> 71 </test>
69 </tests> 72 </tests>
70 <help><![CDATA[ 73 <help><![CDATA[
71 74