diff lefse.xml @ 3:e661312a89c2 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 13:37:35 -0400
parents 4c5e2530dfc9
children c69468622b1e
line wrap: on
line diff
--- a/lefse.xml	Wed Feb 14 09:53:20 2018 -0500
+++ b/lefse.xml	Tue Mar 20 13:37:35 2018 -0400
@@ -70,6 +70,7 @@
         <param name="wilc" type="boolean" truevalue="T" falsevalue="F" checked="true" label="wilc - indicate whether to perform the Wilcoxon test" help=""/>
         <param name="curv" type="boolean" truevalue="T" falsevalue="F" checked="false" label="curv - whether perform the wilcoxon testing the Curtis's approach (beta)" help=""/>
         <param name="norm" type="boolean" truevalue="T" falsevalue="F" checked="true" label="norm - multiply relative abundances by 1000000" help="Recommended when very low values are present"/>
+        <expand macro="param-savelog"/>
     </inputs>
     <outputs>
         <expand macro="logfile-output"/>
@@ -80,6 +81,7 @@
             <param name="otu" value="final.tx.1.subsample.1.pick.shared" ftype="mothur.shared"/>
             <param name="design" value="mouse.design"/>
             <output name="summary" md5="d2c3d2e813607aef0844ec2fb53a5955" ftype="tabular"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test with label and class select -->
@@ -88,6 +90,7 @@
             <param name="label" value="1"/>
             <param name="class" value="dpw"/>
             <output name="summary" md5="d2c3d2e813607aef0844ec2fb53a5955" ftype="tabular"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test with sets -->
@@ -97,6 +100,7 @@
             <param name="label" value="1"/>
             <param name="class" value="dpw"/>
             <output name="summary" md5="64ebfb48d8c3e0bcd993a7ea8aa60e62" ftype="tabular"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
     </tests>