Mercurial > repos > iuc > mothur_lefse

comparison lefse.xml @ 3:e661312a89c2 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 13:37:35 -0400
parents 4c5e2530dfc9
children c69468622b1e
comparison
equal deleted inserted replaced
2:4c5e2530dfc9 3:e661312a89c2
68 <param name="strict" type="integer" value="0" min="0" max="2" label="strict - set the multiple testing correction options" help=" 0 no correction (more strict, default), 1 correction for independent comparisons, 2 correction for independent comparison"/> 68 <param name="strict" type="integer" value="0" min="0" max="2" label="strict - set the multiple testing correction options" help=" 0 no correction (more strict, default), 1 correction for independent comparisons, 2 correction for independent comparison"/>
69 <param name="minc" type="integer" value="10" min="0" label="minc - minimum number of samples per subclass for performing wilcoxon test" help=""/> 69 <param name="minc" type="integer" value="10" min="0" label="minc - minimum number of samples per subclass for performing wilcoxon test" help=""/>
70 <param name="wilc" type="boolean" truevalue="T" falsevalue="F" checked="true" label="wilc - indicate whether to perform the Wilcoxon test" help=""/> 70 <param name="wilc" type="boolean" truevalue="T" falsevalue="F" checked="true" label="wilc - indicate whether to perform the Wilcoxon test" help=""/>
71 <param name="curv" type="boolean" truevalue="T" falsevalue="F" checked="false" label="curv - whether perform the wilcoxon testing the Curtis's approach (beta)" help=""/> 71 <param name="curv" type="boolean" truevalue="T" falsevalue="F" checked="false" label="curv - whether perform the wilcoxon testing the Curtis's approach (beta)" help=""/>
72 <param name="norm" type="boolean" truevalue="T" falsevalue="F" checked="true" label="norm - multiply relative abundances by 1000000" help="Recommended when very low values are present"/> 72 <param name="norm" type="boolean" truevalue="T" falsevalue="F" checked="true" label="norm - multiply relative abundances by 1000000" help="Recommended when very low values are present"/>
73 <expand macro="param-savelog"/>
73 </inputs> 74 </inputs>
74 <outputs> 75 <outputs>
75 <expand macro="logfile-output"/> 76 <expand macro="logfile-output"/>
76 <data name="summary" format="tabular" from_work_dir="shared.*lefse_summary" label="${tool.name} on ${on_string}: summary"/> 77 <data name="summary" format="tabular" from_work_dir="shared.*lefse_summary" label="${tool.name} on ${on_string}: summary"/>
77 </outputs> 78 </outputs>
78 <tests> 79 <tests>
79 <test><!-- test with defaults --> 80 <test><!-- test with defaults -->
80 <param name="otu" value="final.tx.1.subsample.1.pick.shared" ftype="mothur.shared"/> 81 <param name="otu" value="final.tx.1.subsample.1.pick.shared" ftype="mothur.shared"/>
81 <param name="design" value="mouse.design"/> 82 <param name="design" value="mouse.design"/>
82 <output name="summary" md5="d2c3d2e813607aef0844ec2fb53a5955" ftype="tabular"/> 83 <output name="summary" md5="d2c3d2e813607aef0844ec2fb53a5955" ftype="tabular"/>
84 <param name="savelog" value="true"/>
83 <expand macro="logfile-test"/> 85 <expand macro="logfile-test"/>
84 </test> 86 </test>
85 <test><!-- test with label and class select --> 87 <test><!-- test with label and class select -->
86 <param name="otu" value="final.tx.1.subsample.1.pick.shared" ftype="mothur.shared"/> 88 <param name="otu" value="final.tx.1.subsample.1.pick.shared" ftype="mothur.shared"/>
87 <param name="design" value="mouse.design"/> 89 <param name="design" value="mouse.design"/>
88 <param name="label" value="1"/> 90 <param name="label" value="1"/>
89 <param name="class" value="dpw"/> 91 <param name="class" value="dpw"/>
90 <output name="summary" md5="d2c3d2e813607aef0844ec2fb53a5955" ftype="tabular"/> 92 <output name="summary" md5="d2c3d2e813607aef0844ec2fb53a5955" ftype="tabular"/>
93 <param name="savelog" value="true"/>
91 <expand macro="logfile-test"/> 94 <expand macro="logfile-test"/>
92 </test> 95 </test>
93 <test><!-- test with sets --> 96 <test><!-- test with sets -->
94 <param name="otu" value="final.tx.1.subsample.1.pick.shared" ftype="mothur.shared"/> 97 <param name="otu" value="final.tx.1.subsample.1.pick.shared" ftype="mothur.shared"/>
95 <param name="design" value="mouse.design"/> 98 <param name="design" value="mouse.design"/>
96 <param name="sets" value="8,142"/> 99 <param name="sets" value="8,142"/>
97 <param name="label" value="1"/> 100 <param name="label" value="1"/>
98 <param name="class" value="dpw"/> 101 <param name="class" value="dpw"/>
99 <output name="summary" md5="64ebfb48d8c3e0bcd993a7ea8aa60e62" ftype="tabular"/> 102 <output name="summary" md5="64ebfb48d8c3e0bcd993a7ea8aa60e62" ftype="tabular"/>
103 <param name="savelog" value="true"/>
100 <expand macro="logfile-test"/> 104 <expand macro="logfile-test"/>
101 </test> 105 </test>
102 </tests> 106 </tests>
103 <help><![CDATA[ 107 <help><![CDATA[
104 @MOTHUR_OVERVIEW@ 108 @MOTHUR_OVERVIEW@