Mercurial > repos > iuc > mlst

changeset 6:7eb5e58d2263 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mlst commit e0d4688a59e6eeba33adcfe803ac43d0bc2863e7"
author iuc
date Wed, 01 Sep 2021 07:41:48 +0000
parents 5dcc6ed221e2
children 9a019e7a150a
files mlst.xml mlst_list.xml
diffstat 2 files changed, 9 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/mlst.xml	Mon Jun 08 17:08:26 2020 +0000
+++ b/mlst.xml	Wed Sep 01 07:41:48 2021 +0000
@@ -1,8 +1,10 @@
 <tool id="mlst" name="MLST" version="@VERSION@">
-    <description>Scans genomes against PubMLST schemes.</description>
+    <description>Scans genomes against PubMLST schemes</description>
+    <xrefs>
+        <xref type="bio.tools">mlst</xref>
+    </xrefs>
     <macros>
         <import>macros.xml</import>
-
         <xml name="legacy_param">
             <param argument="--legacy" type="boolean" truevalue="--legacy" falsevalue="" checked="true" label="Include allele header" help="Include allele header row in output table (requires scheme to be set)" />
         </xml>
--- a/mlst_list.xml	Mon Jun 08 17:08:26 2020 +0000
+++ b/mlst_list.xml	Wed Sep 01 07:41:48 2021 +0000
@@ -1,5 +1,8 @@
 <tool id="mlst_list" name="MLST List" version="@VERSION@">
-    <description>Lists available schemes for the MLST tool.</description>
+    <description>Lists available schemes for the MLST tool</description>
+    <xrefs>
+        <xref type="bio.tools">mlst</xref>
+    </xrefs>
     <macros>
         <import>macros.xml</import>
     </macros>
@@ -7,7 +10,7 @@
     <expand macro="version_command" />
 
     <command detect_errors="exit_code"><![CDATA[
-        mlst $list_type > "$report"
+        mlst $list_type > '$report'
     ]]></command>
 
     <inputs>