Mercurial > repos > iuc > mitos

diff mitos.xml @ 6:bfa34f944cf9 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/mitos commit 24a59e271fbe0b87d826d1d36b3a9ea008227adc
author iuc
date Wed, 10 Dec 2025 23:29:56 +0000
parents e03de7c5f99b
children
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--- a/mitos.xml	Wed Mar 01 22:39:06 2023 +0000
+++ b/mitos.xml	Wed Dec 10 23:29:56 2025 +0000
@@ -1,14 +1,14 @@
 <tool id="mitos" name="@MITOS_NAME@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05">
   <description>de-novo annotation of metazoan mitochondrial genomes</description>
+  <macros>
+    <import>macros.xml</import>
+    <token name="@MITOS_NAME@">MITOS</token>
+    <token name="@TOOL_VERSION@">1.1.7</token>
+    <token name="@VERSION_SUFFIX@">0</token>
+  </macros>
   <xrefs>
       <xref type='bio.tools'>mitos</xref>
   </xrefs>
-  <macros>
-    <import>macros.xml</import>
-    <token name="@MITOS_NAME@">MITOS</token>
-    <token name="@TOOL_VERSION@">1.1.1</token>
-    <token name="@VERSION_SUFFIX@">0</token>
-  </macros>
   <requirements>
     <requirement type="package" version="@TOOL_VERSION@">mitos</requirement>
   </requirements>
@@ -166,7 +166,12 @@
       <output name="protein_plot_out" file="NC_012920_prot.pdf" ftype="pdf" compare="sim_size"/>
       <output name="ncRNA_plot_out" file="NC_012920_ncrna.pdf" ftype="pdf" compare="sim_size"/>
       <output_collection name="ncRNA_structure_plot_svg_out" type="list" count="24">
-         <element name="trnA-5586-5654" file="NC_012920_trnA.svg" ftype="svg" /> 
+         <element name="trnA-5586-5654" ftype="svg">
+          <assert_contents>
+            <has_text text="&lt;svg"/>
+            <has_size min="100"/>
+          </assert_contents>
+         </element>
       </output_collection>
       <assert_command>
         <has_text text="--code 2"/>