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comparison mitos.xml @ 6:bfa34f944cf9 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/mitos commit 24a59e271fbe0b87d826d1d36b3a9ea008227adc
author iuc
date Wed, 10 Dec 2025 23:29:56 +0000
parents e03de7c5f99b
children
comparison
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5:e03de7c5f99b 6:bfa34f944cf9
1 <tool id="mitos" name="@MITOS_NAME@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05"> 1 <tool id="mitos" name="@MITOS_NAME@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05">
2 <description>de-novo annotation of metazoan mitochondrial genomes</description> 2 <description>de-novo annotation of metazoan mitochondrial genomes</description>
3 <macros>
4 <import>macros.xml</import>
5 <token name="@MITOS_NAME@">MITOS</token>
6 <token name="@TOOL_VERSION@">1.1.7</token>
7 <token name="@VERSION_SUFFIX@">0</token>
8 </macros>
3 <xrefs> 9 <xrefs>
4 <xref type='bio.tools'>mitos</xref> 10 <xref type='bio.tools'>mitos</xref>
5 </xrefs> 11 </xrefs>
6 <macros>
7 <import>macros.xml</import>
8 <token name="@MITOS_NAME@">MITOS</token>
9 <token name="@TOOL_VERSION@">1.1.1</token>
10 <token name="@VERSION_SUFFIX@">0</token>
11 </macros>
12 <requirements> 12 <requirements>
13 <requirement type="package" version="@TOOL_VERSION@">mitos</requirement> 13 <requirement type="package" version="@TOOL_VERSION@">mitos</requirement>
14 </requirements> 14 </requirements>
15 <version_command>python -c "import mitos; print(mitos.__version__)"</version_command> 15 <version_command>python -c "import mitos; print(mitos.__version__)"</version_command>
16 <command detect_errors="aggressive"><![CDATA[ 16 <command detect_errors="aggressive"><![CDATA[
164 </output> 164 </output>
165 <output name="geneorderout" file="NC_012920.geneorder" ftype="fasta" /> 165 <output name="geneorderout" file="NC_012920.geneorder" ftype="fasta" />
166 <output name="protein_plot_out" file="NC_012920_prot.pdf" ftype="pdf" compare="sim_size"/> 166 <output name="protein_plot_out" file="NC_012920_prot.pdf" ftype="pdf" compare="sim_size"/>
167 <output name="ncRNA_plot_out" file="NC_012920_ncrna.pdf" ftype="pdf" compare="sim_size"/> 167 <output name="ncRNA_plot_out" file="NC_012920_ncrna.pdf" ftype="pdf" compare="sim_size"/>
168 <output_collection name="ncRNA_structure_plot_svg_out" type="list" count="24"> 168 <output_collection name="ncRNA_structure_plot_svg_out" type="list" count="24">
169 <element name="trnA-5586-5654" file="NC_012920_trnA.svg" ftype="svg" /> 169 <element name="trnA-5586-5654" ftype="svg">
170 <assert_contents>
171 <has_text text="&lt;svg"/>
172 <has_size min="100"/>
173 </assert_contents>
174 </element>
170 </output_collection> 175 </output_collection>
171 <assert_command> 176 <assert_command>
172 <has_text text="--code 2"/> 177 <has_text text="--code 2"/>
173 <has_text text="--finovl 35"/> 178 <has_text text="--finovl 35"/>
174 <has_text text="--evalue 2.0"/> 179 <has_text text="--evalue 2.0"/>