Mercurial > repos > iuc > migmap

annotate migmap.xml @ 1:eb806186aa93 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/migmap commit 9028fa28c7b3216926bf999dd21c5f156d1cc63e
author iuc
date Sat, 04 Aug 2018 12:21:58 -0400
parents cbf4a6ffc369
children 39a143860749
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
1
eb806186aa93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/migmap commit 9028fa28c7b3216926bf999dd21c5f156d1cc63e
iuc
parents: 0
diff changeset
1 <tool id="migmap" name="MiGMAP" version="1.0.2.2">
0
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
2 <description>mapper for full-length T- and B-cell repertoire sequencing
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
3 </description>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
4 <requirements>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
5 <requirement type="package" version="1.0.2">migmap</requirement>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
6 </requirements>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
7 <command detect_errors='exit_code'><![CDATA[
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
8 export IGBLAST_PATH=\$(dirname \$(which igblastn)) &&
1
eb806186aa93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/migmap commit 9028fa28c7b3216926bf999dd21c5f156d1cc63e
iuc
parents: 0
diff changeset
9 mkdir temp_db &&
eb806186aa93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/migmap commit 9028fa28c7b3216926bf999dd21c5f156d1cc63e
iuc
parents: 0
diff changeset
10 ln -s "\${IGBLAST_PATH}/../share/igblast/" ./temp_db/ &&
eb806186aa93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/migmap commit 9028fa28c7b3216926bf999dd21c5f156d1cc63e
iuc
parents: 0
diff changeset
11
0
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
12 #if $input.is_of_type('fasta') :
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
13 ln -s '$input' in.fa &&
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
14 #else
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
15 ln -s '$input' in.fq &&
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
16 #end if
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
17 migmap
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
18 $allow_incomplete
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
19 $allow_no_cdr3
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
20 $allow_noncanonical
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
21 $allow_noncoding
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
22 $all_alleles
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
23 $by_read
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
24 #if str($qual_threshold):
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
25 -q $qual_threshold
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
26 #end if
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
27 -p "\${GALAXY_SLOTS:-4}"
1
eb806186aa93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/migmap commit 9028fa28c7b3216926bf999dd21c5f156d1cc63e
iuc
parents: 0
diff changeset
28 --data-dir ./temp_db/igblast/
0
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
29 -S $species
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
30 -R $receptor_list
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
31 #if $input.is_of_type('fasta'):
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
32 in.fa
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
33 #else
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
34 in.fq
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
35 #end if
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
36 '$output'
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
37 ]]></command>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
38 <inputs>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
39 <param type="data" name="input" format="fasta,fastq"/>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
40 <param type="select" name="species" label="Species" value='human'>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
41 <option value='human' selected='true'>Human</option>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
42 <option value='mouse'>Mouse</option>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
43 <option value='rat'>Rat</option>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
44 <option value='rabbit'>Rabbit</option>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
45 <option value='rhesus_monkey'>Rhesus monkey</option>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
46 </param>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
47 <param type="select" name="receptor_list" label="Receptor and Chain" multiple='true' value='IGH'>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
48 <option value='IGH' selected='true'>IGH</option>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
49 <option value='IGL'>IGL</option>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
50 <option value='IGK'>IGK</option>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
51 <option value='TRA'>TRA</option>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
52 <option value='TRB'>TRB</option>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
53 <option value='TRG'>TRG</option>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
54 <option value='TRD'>TRD</option>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
55 </param>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
56 <param name="qual_threshold" type="integer" label="Quality Theshold" optional="true"
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
57 help="Threshold for average quality of mutations and N-regions of CDR3 (only relevant for fastq input)"/>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
58 <param name="allow_incomplete" type="boolean" label="Report clonotypes with partial CDR3 mapping" checked="false"
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
59 truevalue="--allow-incomplete" falsevalue=""/>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
60 <param name="all_alleles" type="boolean"
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
61 label="use all alleles during alignemt (default = only major (*01) alleles)" checked='false'
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
62 truevalue="--all-alleles" falsevalue=""/>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
63 <param name="allow_no_cdr3" type="boolean" label="Report clonotypes with no CDR3" checked='false'
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
64 truevalue="--allow-no-cdr3" falsevalue=""/>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
65 <param name="allow_noncanonical" type="boolean" label="Report clonotypes that have non-canonical CDR3"
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
66 checked='false'
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
67 truevalue="--allow-noncanonical" falsevalue=""/>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
68 <param name="allow_noncoding" type="boolean" label="Report non-coding clonotypes (stop codon or frameshift)"
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
69 checked='false'
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
70 truevalue="--allow-noncoding" falsevalue=""/>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
71 <param name="by_read" type="boolean" label="Report mapping details for each read" checked='false'
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
72 truevalue="--by-read" falsevalue=""/>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
73 </inputs>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
74 <outputs>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
75 <data name="output" format="tabular"/>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
76 </outputs>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
77 <tests>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
78 <test>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
79 <param name="input" value="test_stop_codon.fa"/>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
80 <param name="allow_noncoding" value="--allow-noncoding"/>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
81 <param name="by_read" value="--by-read"/>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
82 <param name="allow_noncanonical" value="--allow-noncanonical"/>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
83 <param name="allow_no_cdr3" value="--allow-no-cdr3"/>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
84 <param name="allow_incomplete" value="--allow-incomplete"/>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
85 <param name="all_alleles" value="--all-alleles"/>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
86 <output name="output" file="test_stop_codon.out"/>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
87 </test>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
88 <test>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
89 <param name="allow_noncoding" value="--allow-noncoding"/>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
90 <param name="by_read" value="--by-read"/>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
91 <param name="input" value="test_out_of_frame.fa"/>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
92 <output name="output" file="test_out_of_frame.out"/>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
93 </test>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
94 </tests>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
95 <help><![CDATA[
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
96
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
97 This software is a smart wrapper for the IgBlast V-(D)-J mapping tool designed to facilitate analysis immune
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
98 receptor libraries profiled using high-throughput sequencing
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
99
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
100 ]]></help>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
101 <citations>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
102 <citation type="bibtex">
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
103 @misc{githubmigmap,
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
104 author = {Shugay, Mikhail},
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
105 year = {2015},
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
106 title = {migmap},
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
107 publisher = {GitHub},
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
108 journal = {GitHub repository},
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
109 url = {https://github.com/mikessh/migmap},
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
110 }
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
111 </citation>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
112 </citations>
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
113 </tool>