Mercurial > repos > iuc > mageck_count

annotate mageck_macros.xml @ 6:2178b98685b0 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 0c76d2d8677e66d4f76ac748614c7911f298758c
author iuc
date Sat, 05 Jan 2019 05:46:20 -0500
parents 541a5bb7c8c2
children 4e8e0f5f3f4c
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34e449d244c7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 3a58259cd0f035510963d470ea8ddbe551aea058-dirty
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1 <?xml version="1.0"?>
34e449d244c7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 3a58259cd0f035510963d470ea8ddbe551aea058-dirty
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2 <macros>
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2178b98685b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 0c76d2d8677e66d4f76ac748614c7911f298758c
iuc
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4 <token name="@VERSION@">0.5.8</token>
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90d6bd926a9b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 49e456dda49db1f52fc876f406a10273a408b1a2
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34e449d244c7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 3a58259cd0f035510963d470ea8ddbe551aea058-dirty
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6 <xml name="requirements">
34e449d244c7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 3a58259cd0f035510963d470ea8ddbe551aea058-dirty
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7 <requirements>
34e449d244c7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 3a58259cd0f035510963d470ea8ddbe551aea058-dirty
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8 <requirement type="package" version="@VERSION@">mageck</requirement>
34e449d244c7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 3a58259cd0f035510963d470ea8ddbe551aea058-dirty
iuc
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9 <requirement type="package" version="3.0.1">r-gplots</requirement>
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2178b98685b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 0c76d2d8677e66d4f76ac748614c7911f298758c
iuc
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10 <requirement type="package" version="1.8_3">r-xtable</requirement>
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11 <yield/>
34e449d244c7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 3a58259cd0f035510963d470ea8ddbe551aea058-dirty
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12 </requirements>
34e449d244c7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 3a58259cd0f035510963d470ea8ddbe551aea058-dirty
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13 </xml>
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34e449d244c7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 3a58259cd0f035510963d470ea8ddbe551aea058-dirty
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15 <xml name="version">
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16 <version_command><![CDATA[
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17 echo $(mageck -v )", gplots version" $(R --vanilla --slave -e "library(gplots); cat(sessionInfo()\$otherPkgs\$gplots\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", xtable version" $(R --vanilla --slave -e "library(xtable); cat(sessionInfo()\$otherPkgs\$xtable\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
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90d6bd926a9b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 49e456dda49db1f52fc876f406a10273a408b1a2
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18 ]]></version_command>
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34e449d244c7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 3a58259cd0f035510963d470ea8ddbe551aea058-dirty
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19 </xml>
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21 <xml name="sort_criteria">
90d6bd926a9b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 49e456dda49db1f52fc876f406a10273a408b1a2
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22 <param name="sort_criteria" argument="--sort-criteria" type="select" optional="true" label="Sorting criteria">
90d6bd926a9b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 49e456dda49db1f52fc876f406a10273a408b1a2
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23 <option value="neg" selected="True">Negative selection</option>
90d6bd926a9b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 49e456dda49db1f52fc876f406a10273a408b1a2
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24 <option value="pos">positive selection</option>
90d6bd926a9b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 49e456dda49db1f52fc876f406a10273a408b1a2
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25 </param>
90d6bd926a9b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 49e456dda49db1f52fc876f406a10273a408b1a2
iuc
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26 </xml>
90d6bd926a9b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 49e456dda49db1f52fc876f406a10273a408b1a2
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27
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34e449d244c7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 3a58259cd0f035510963d470ea8ddbe551aea058-dirty
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28 <xml name="citations">
34e449d244c7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 3a58259cd0f035510963d470ea8ddbe551aea058-dirty
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29 <citations>
34e449d244c7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 3a58259cd0f035510963d470ea8ddbe551aea058-dirty
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30 <citation type="doi">10.1186/s13059-014-0554-4</citation>
34e449d244c7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 3a58259cd0f035510963d470ea8ddbe551aea058-dirty
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31 </citations>
34e449d244c7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 3a58259cd0f035510963d470ea8ddbe551aea058-dirty
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32 </xml>
34e449d244c7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 3a58259cd0f035510963d470ea8ddbe551aea058-dirty
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33 </macros>